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Retrieving gene functional networks from knowledge databases presents a challenge due to the mismatch between disease networks and subtype-specific variations. Current solutions, including statistical and deep learning methods, often fail…

Machine Learning · Computer Science 2025-02-25 Ziwei Yang , Zheng Chen , Xin Liu , Rikuto Kotoge , Peng Chen , Yasuko Matsubara , Yasushi Sakurai , Jimeng Sun

Textual-edge Graphs (TEGs), characterized by rich text annotations on edges, are increasingly significant in network science due to their ability to capture rich contextual information among entities. Existing works have proposed various…

Social and Information Networks · Computer Science 2024-11-19 Chen Ling , Zhuofeng Li , Yuntong Hu , Zheng Zhang , Zhongyuan Liu , Shuang Zheng , Jian Pei , Liang Zhao

Explainable artificial intelligence (XAI) is an important area in the AI community, and interpretability is crucial for building robust and trustworthy AI models. While previous work has explored model-level and instance-level explainable…

Machine Learning · Computer Science 2025-12-05 Xudong Wang , Ziheng Sun , Chris Ding , Jicong Fan

Link prediction is a crucial research area in knowledge graphs, with many downstream applications. In many real-world scenarios, inductive link prediction is required, where predictions have to be made among unseen entities. Embedding-based…

Machine Learning · Computer Science 2024-07-10 Canlin Zhang , Xiuwen Liu

The task of fully inductive link prediction in knowledge graphs has gained significant attention, with various graph neural networks being proposed to address it. This task presents greater challenges than traditional inductive link…

Machine Learning · Computer Science 2025-01-15 Jincheng Zhou , Yucheng Zhang , Jianfei Gao , Yangze Zhou , Bruno Ribeiro

Deep Neural Networks have shown tremendous success in the area of object recognition, image classification and natural language processing. However, designing optimal Neural Network architectures that can learn and output arbitrary graphs…

Machine Learning · Computer Science 2019-07-02 Mital Kinderkhedia

Inductive knowledge graph completion has been considered as the task of predicting missing triplets between new entities that are not observed during training. While most inductive knowledge graph completion methods assume that all entities…

Machine Learning · Computer Science 2023-08-21 Jaejun Lee , Chanyoung Chung , Joyce Jiyoung Whang

Federated graph learning collaboratively learns a global graph neural network with distributed graphs, where the non-independent and identically distributed property is one of the major challenges. Most relative arts focus on traditional…

Machine Learning · Computer Science 2024-07-02 Wenke Huang , Guancheng Wan , Mang Ye , Bo Du

Academic citation graphs represent citation relationships between publications across the full range of academic fields. Top cited papers typically reveal future trends in their corresponding domains which is of importance to both…

Machine Learning · Computer Science 2021-04-07 Daniel Cummings , Marcel Nassar

The problem of unsupervised learning node embeddings in graphs is one of the important directions in modern network science. In this work we propose a novel framework, which is aimed to find embeddings by \textit{discriminating…

Machine Learning · Statistics 2020-01-24 Stanislav Tsepa , Maxim Panov

In many domains where data are represented as graphs, learning a similarity metric among graphs is considered a key problem, which can further facilitate various learning tasks, such as classification, clustering, and similarity search.…

Machine Learning · Computer Science 2020-10-06 Guixiang Ma , Nesreen K. Ahmed , Theodore L. Willke , Philip S. Yu

Graph neural networks (GNNs) have emerged as a powerful tool for graph classification and representation learning. However, GNNs tend to suffer from over-smoothing problems and are vulnerable to graph perturbations. To address these…

Machine Learning · Computer Science 2021-11-01 Yuzhou Chen , Baris Coskunuzer , Yulia R. Gel

Graph neural architecture search has sparked much attention as Graph Neural Networks (GNNs) have shown powerful reasoning capability in many relational tasks. However, the currently used graph search space overemphasizes learning node…

Machine Learning · Computer Science 2022-06-01 Shaofei Cai , Liang Li , Xinzhe Han , Jiebo Luo , Zheng-Jun Zha , Qingming Huang

The problem of link prediction is of active interest. The main approach to solving the link prediction problem is based on heuristics such as Common Neighbors (CN) -- more number of common neighbors of a pair of nodes implies a higher…

Machine Learning · Computer Science 2021-11-02 Govind Sharma , Aditya Challa , Paarth Gupta , M. Narasimha Murty

Learning graph representations is a fundamental task aimed at capturing various properties of graphs in vector space. The most recent methods learn such representations for static networks. However, real world networks evolve over time and…

Social and Information Networks · Computer Science 2019-08-22 Palash Goyal , Sujit Rokka Chhetri , Arquimedes Canedo

Deep learning has recently demonstrated its ability to rival the human brain for visual object recognition. As datasets get larger, a natural question to ask is if existing deep learning architectures can be extended to handle the 50+K…

Machine Learning · Computer Science 2020-08-04 Sumanth Chennupati , Sai Nooka , Shagan Sah , Raymond W Ptucha

Graph-structured data are pervasive in the real-world such as social networks, molecular graphs and transaction networks. Graph neural networks (GNNs) have achieved great success in representation learning on graphs, facilitating various…

Machine Learning · Computer Science 2025-02-27 Zhimeng Guo , Teng Xiao , Zongyu Wu , Charu Aggarwal , Hui Liu , Suhang Wang

The task of inductive link prediction in (discrete) attributed multigraphs infers missing attributed links (relations) between nodes in new test multigraphs. Traditional relational learning methods face the challenge of limited…

Machine Learning · Computer Science 2023-12-06 Jincheng Zhou , Beatrice Bevilacqua , Bruno Ribeiro

Modern data analysis pipelines are becoming increasingly complex due to the presence of multi-view information sources. While graphs are effective in modeling complex relationships, in many scenarios a single graph is rarely sufficient to…

Machine Learning · Statistics 2019-04-02 Uday Shankar Shanthamallu , Jayaraman J. Thiagarajan , Huan Song , Andreas Spanias

We present a learning-based approach to computing solutions for certain NP-hard problems. Our approach combines deep learning techniques with useful algorithmic elements from classic heuristics. The central component is a graph…

Machine Learning · Computer Science 2018-10-26 Zhuwen Li , Qifeng Chen , Vladlen Koltun