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With rapidly increasing data, clustering algorithms are important tools for data analytics in modern research. They have been successfully applied to a wide range of domains; for instance, bioinformatics, speech recognition, and financial…

Data Structures and Algorithms · Computer Science 2015-12-01 Ka-Chun Wong

Real social networks are often compared to random graphs in order to assess whether their typological structure could be the result of random processes. However, an Erd\H{o}s-R\'enyi random graph in large scale is often lack of local…

Physics and Society · Physics 2013-01-30 Cheng Wang

We present a novel approach for finding and evaluating structural models of small metallic nanoparticles. Rather than fitting a single model with many degrees of freedom, the approach algorithmically builds libraries of nanoparticle…

This paper presents a novel clustering algorithm from the SPINEX (Similarity-based Predictions with Explainable Neighbors Exploration) algorithmic family. The newly proposed clustering variant leverages the concept of similarity and…

Machine Learning · Computer Science 2024-07-11 MZ Naser , Ahmed Naser

We propose a general approach to compute the seed sensitivity, that can be applied to different definitions of seeds. It treats separately three components of the seed sensitivity problem -- a set of target alignments, an associated…

Data Structures and Algorithms · Computer Science 2010-01-19 Gregory Kucherov , Laurent Noé , Mihkail Roytberg

Clustering algorithms aim to organize data into groups or clusters based on the inherent patterns and similarities within the data. They play an important role in today's life, such as in marketing and e-commerce, healthcare, data…

Machine Learning · Computer Science 2024-01-17 Hui Yin , Amir Aryani , Stephen Petrie , Aishwarya Nambissan , Aland Astudillo , Shengyuan Cao

K-means is one of the most widely used clustering algorithms in various disciplines, especially for large datasets. However the method is known to be highly sensitive to initial seed selection of cluster centers. K-means++ has been proposed…

Machine Learning · Computer Science 2016-04-19 Fouad Khan

Using D-theory we construct a new efficient cluster algorithm for the Ising model. The construction is very different from the standard Swendsen-Wang algorithm and related to worm algorithms. With the new algorithm we have measured the…

High Energy Physics - Lattice · Physics 2016-09-01 Matthias Nyfeler , Michele Pepe , Uwe-Jens Wiese

Clustering analysis identifies samples as groups based on either their mutual closeness or homogeneity. In order to detect clusters in arbitrary shapes, a novel and generic solution based on boundary erosion is proposed. The clusters are…

Computer Vision and Pattern Recognition · Computer Science 2018-04-16 Cheng-Hao Deng , Wan-Lei Zhao

We study the design of interactive clustering algorithms for data sets satisfying natural stability assumptions. Our algorithms start with any initial clustering and only make local changes in each step; both are desirable features in many…

Data Structures and Algorithms · Computer Science 2015-03-23 Pranjal Awasthi , Maria-Florina Balcan , Konstantin Voevodski

Text Clustering is a text mining technique which divides the given set of text documents into significant clusters. It is used for organizing a huge number of text documents into a well-organized form. In the majority of the clustering…

Information Retrieval · Computer Science 2015-03-12 G. Hannah Grace , Kalyani Desikan

We introduce a framework for $\mathbb{Z}$-gradings on cluster algebras (and their quantum analogues) that are compatible with mutation. To do this, one chooses the degrees of the (quantum) cluster variables in an initial seed subject to a…

Quantum Algebra · Mathematics 2014-12-03 Jan E. Grabowski , Stéphane Launois

We propose a nearest neighbor based clustering algorithm that results in a naturally defined hierarchy of clusters. In contrast to the agglomerative and divisive hierarchical clustering algorithms, our approach is not dependent on the…

Data Structures and Algorithms · Computer Science 2022-03-16 Kaan Gokcesu , Hakan Gokcesu

This is Addendum to ``Structure of seeds in generalized cluster algebras'', Pacific J. Math. {277} (2015), 201--218. We extend the class of generalized cluster algebras studied therein to embrace examples in some applications.

Rings and Algebras · Mathematics 2024-06-13 Tomoki Nakanishi

We present a technique for clustering categorical data by generating many dissimilarity matrices and averaging over them. We begin by demonstrating our technique on low dimensional categorical data and comparing it to several other…

Machine Learning · Statistics 2017-09-20 Saeid Amiri , Bertrand Clarke , Jennifer Clarke

We survey agglomerative hierarchical clustering algorithms and discuss efficient implementations that are available in R and other software environments. We look at hierarchical self-organizing maps, and mixture models. We review grid-based…

Information Retrieval · Computer Science 2011-05-03 Fionn Murtagh , Pedro Contreras

Cluster analysis methods are used to identify homogeneous subgroups in a data set. In biomedical applications, one frequently applies cluster analysis in order to identify biologically interesting subgroups. In particular, one may wish to…

Methodology · Statistics 2016-09-23 Sheila Gaynor , Eric Bair

We give a uniform geometric realization for the cluster algebra of an arbitrary finite type with principal coefficients at an arbitrary acyclic seed. This algebra is realized as the coordinate ring of a certain reduced double Bruhat cell in…

Rings and Algebras · Mathematics 2008-05-19 Shih-Wei Yang , Andrei Zelevinsky

Matrices are two-dimensional data structures allowing one to conceptually organize information. For example, adjacency matrices are useful to store the links of a network; correlation matrices are simple ways to arrange gene co-expression…

Disordered Systems and Neural Networks · Physics 2022-09-29 Flaviano Morone

We present a new technique for estimating the distance to young open clusters. The method requires accurate measurement of the axial rotation period of late-type members of the cluster: rotation periods are first combined with projected…

Astrophysics · Physics 2015-06-24 Martin A. Hendry , Mark A. O'Dell , Andrew Collier-Cameron