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This tutorial covers biomedical image reconstruction, from the foundational concepts of system modeling and direct reconstruction to modern sparsity and learning-based approaches. Imaging is a critical tool in biological research and…

Image and Video Processing · Electrical Eng. & Systems 2021-03-12 Michael T. McCann , Michael Unser

Mix-based augmentation has been proven fundamental to the generalization of deep vision models. However, current augmentations only mix samples at the current data batch during training, which ignores the possible knowledge accumulated in…

Computer Vision and Pattern Recognition · Computer Science 2022-03-15 Lingfeng Yang , Xiang Li , Borui Zhao , Renjie Song , Jian Yang

Deep learning has emerged as a strong alternative for classical iterative methods for deformable medical image registration, where the goal is to find a mapping between the coordinate systems of two images. Popular classical image…

Computer Vision and Pattern Recognition · Computer Science 2024-12-03 Joel Honkamaa , Pekka Marttinen

Tomographic image sizes keep increasing over time and while the GPUs that compute the tomographic reconstruction are also increasing in memory size, they are not doing so fast enough to reconstruct the largest datasets. This problem is…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-10 Ander Biguri , Reuben Lindroos , Robert Bryll , Hossein Towsyfyan , Hans Deyhle , Richard Boardman , Mark Mavrogordato , Manjit Dosanjh , Steven Hancock , Thomas Blumensath

The importance of regularization has been well established in image reconstruction -- which is the computational inversion of imaging forward model -- with applications including deconvolution for microscopy, tomographic reconstruction,…

Image and Video Processing · Electrical Eng. & Systems 2021-06-29 Sanjay Viswanath , Manu Ghulyani , Muthuvel Arigovindan

Content-based image retrieval is the process of retrieving a subset of images from an extensive image gallery based on visual contents, such as color, shape or spatial relations, and texture. In some applications, such as localization,…

Computer Vision and Pattern Recognition · Computer Science 2023-03-16 Saeideh Yousefzadeh , Hamidreza Pourreza , Hamidreza Mahyar

For lossy image compression systems, we develop an algorithm, iterative refinement, to improve the decoder's reconstruction compared to standard decoding techniques. Specifically, we propose a recurrent neural network approach for…

Computer Vision and Pattern Recognition · Computer Science 2018-11-13 Alexander G. Ororbia , Ankur Mali , Jian Wu , Scott O'Connell , David Miller , C. Lee Giles

Undersampling the k-space in MRI allows saving precious acquisition time, yet results in an ill-posed inversion problem. Recently, many deep learning techniques have been developed, addressing this issue of recovering the fully sampled MR…

Image and Video Processing · Electrical Eng. & Systems 2020-07-28 Mélanie Gaillochet , Kerem C. Tezcan , Ender Konukoglu

Inversion by Direct Iteration (InDI) is a new formulation for supervised image restoration that avoids the so-called "regression to the mean" effect and produces more realistic and detailed images than existing regression-based methods. It…

Image and Video Processing · Electrical Eng. & Systems 2024-02-05 Mauricio Delbracio , Peyman Milanfar

Demosaicking and denoising are among the most crucial steps of modern digital camera pipelines and their joint treatment is a highly ill-posed inverse problem where at-least two-thirds of the information are missing and the rest are…

Computer Vision and Pattern Recognition · Computer Science 2018-07-13 Filippos Kokkinos , Stamatios Lefkimmiatis

Parallel imaging is a widely-used technique to accelerate magnetic resonance imaging (MRI). However, current methods still perform poorly in reconstructing artifact-free MRI images from highly undersampled k-space data. Recently, implicit…

Image and Video Processing · Electrical Eng. & Systems 2022-10-20 Ruimin Feng , Qing Wu , Yuyao Zhang , Hongjiang Wei

Quantifying hemodynamics in the curved segments of the intracranial internal carotid artery is a core challenge in diagnosing vascular stenosis. Conventional full-field imaging, such as 4D Flow MRI, is costly and difficult to widely…

Medical Physics · Physics 2026-05-14 Jingtai Song , Qinsheng Zhu , Xiaodong Xing , Yufeng Tang , Zhiyun Zhang , Xianwen Zhang , Hao Wu

X-ray tomography is a reliable tool for determining the inner structure of 3D object with penetrating X-rays. However, traditional reconstruction methods such as FDK require dense angular sampling in the data acquisition phase leading to…

Neural implicit representations have revolutionized dense multi-view surface reconstruction, yet their performance significantly diminishes with sparse input views. A few pioneering works have sought to tackle the challenge of sparse-view…

Computer Vision and Pattern Recognition · Computer Science 2024-09-10 Sheng Ye , Yuze He , Matthieu Lin , Jenny Sheng , Ruoyu Fan , Yiheng Han , Yubin Hu , Ran Yi , Yu-Hui Wen , Yong-Jin Liu , Wenping Wang

We propose a method to reconstruct and cluster incomplete high-dimensional data lying in a union of low-dimensional subspaces. Exploring the sparse representation model, we jointly estimate the missing data while imposing the intrinsic…

Computer Vision and Pattern Recognition · Computer Science 2017-09-06 João Carvalho , Manuel Marques , João P. Costeira

Streaming reconstruction from monocular image sequences remains challenging, as existing methods typically favor either high-quality rendering or accurate geometry, but rarely both. We present PLANING, an efficient on-the-fly reconstruction…

Computer Vision and Pattern Recognition · Computer Science 2026-03-12 Changjian Jiang , Kerui Ren , Xudong Li , Kaiwen Song , Guanghao Li , Linning Xu , Tao Lu , Junting Dong , Yu Zhang , Bo Dai , Mulin Yu

Many imaging technologies rely on tomographic reconstruction, which requires solving a multidimensional inverse problem given a finite number of projections. Backprojection is a popular class of algorithm for tomographic reconstruction,…

Image and Video Processing · Electrical Eng. & Systems 2020-06-03 Xueqing Liu , Paul Sajda

Diffeomorphic deformable image registration is one of the crucial tasks in medical image analysis, which aims to find a unique transformation while preserving the topology and invertibility of the transformation. Deep convolutional neural…

Image and Video Processing · Electrical Eng. & Systems 2022-02-09 Ameneh Sheikhjafari , Michelle Noga , Kumaradevan Punithakumar , Nilanjan Ray

Sparse-view computed tomography (CT) is an effective method to reduce the radiation exposure in medical imaging. To reduce the severe streaking artifacts that occur in reconstructed images due to violation of the Nyquist/Shannon sampling…

Medical Physics · Physics 2026-03-17 Huiying Li , Yizhuang Song

This paper introduces a new shape-based image reconstruction technique applicable to a large class of imaging problems formulated in a variational sense. Given a collection of shape priors (a shape dictionary), we define our problem as…

Functional Analysis · Mathematics 2013-03-04 Alireza Aghasi , Justin Romberg