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In computational materials science, a common means for predicting macroscopic (e.g., mechanical) properties of an alloy is to define a model using combinations of descriptors that depend on some material properties (elastic constants,…

Materials Science · Physics 2022-10-17 Ivan Novikov , Olga Kovalyova , Alexander Shapeev , Max Hodapp

For many classification and regression problems, a large number of features are available for possible use - this is typical of DNA microarray data on gene expression, for example. Often, for computational or other reasons, only a small…

Statistics Theory · Mathematics 2007-06-13 Longhai Li , Jianguo Zhang , Radford M. Neal

Techniques for understanding the functioning of complex machine learning models are becoming increasingly popular, not only to improve the validation process, but also to extract new insights about the data via exploratory analysis. Though…

Machine Learning · Statistics 2018-11-02 Jayaraman J. Thiagarajan , Irene Kim , Rushil Anirudh , Peer-Timo Bremer

We have developed a method that can analyze large random grain boundary (GB) models with the accuracy of density functional theory (DFT) calculations using active learning. It is assumed that the atomic energy is represented by the linear…

Materials Science · Physics 2020-11-11 Tomoyuki Tamura , Masayuki Karasuyama

When protein stability is measured by denaturant induced unfolding the linear extrapolation method is usually used to analyse the data. This method is based on the observation that the change in Gibbs free energy associated with unfolding,…

Methodology · Statistics 2020-03-20 Kresten Lindorff-Larsen

Due to the vast testing space, the increasing demand for effective and efficient testing of deep neural networks (DNNs) has led to the development of various DNN test case prioritization techniques. However, the fact that DNNs can deliver…

Software Engineering · Computer Science 2024-09-17 Jialuo Chen , Jingyi Wang , Xiyue Zhang , Youcheng Sun , Marta Kwiatkowska , Jiming Chen , Peng Cheng

Feature selection that selects an informative subset of variables from data not only enhances the model interpretability and performance but also alleviates the resource demands. Recently, there has been growing attention on feature…

Neural and Evolutionary Computing · Computer Science 2023-03-15 Zahra Atashgahi , Xuhao Zhang , Neil Kichler , Shiwei Liu , Lu Yin , Mykola Pechenizkiy , Raymond Veldhuis , Decebal Constantin Mocanu

The amount of information in the form of features and variables avail- able to machine learning algorithms is ever increasing. This can lead to classifiers that are prone to overfitting in high dimensions, high di- mensional models do not…

Machine Learning · Computer Science 2014-02-12 Aaron Karper

In modern scientific research, the objective is often to identify which variables are associated with an outcome among a large class of potential predictors. This goal can be achieved by selecting variables in a manner that controls the the…

Methodology · Statistics 2023-10-10 Yushu Shi , Michael Martens

Computational chemistry has come a long way over the course of several decades, enabling subatomic level calculations particularly with the development of Density Functional Theory (DFT). Recently, machine-learned potentials (MLP) have…

MOTIVATION: Proteins fold into complex structures that are crucial for their biological functions. Experimental determination of protein structures is costly and therefore limited to a small fraction of all known proteins. Hence, different…

Biomolecules · Quantitative Biology 2018-04-18 David Menéndez Hurtado , Karolis Uziela , Arne Elofsson

Model-form uncertainty (MFU) in assumptions made during physics-based model development is widely considered a significant source of uncertainty; however, there are limited approaches that can quantify MFU in predictions extrapolating…

Computational Engineering, Finance, and Science · Computer Science 2025-09-16 Teresa Portone , Rebekah D. White , Joseph L. Hart

Testing of deep learning models is challenging due to the excessive number and complexity of computations involved. As a result, test data selection is performed manually and in an ad hoc way. This raises the question of how we can…

Machine Learning · Computer Science 2019-05-01 Wei Ma , Mike Papadakis , Anestis Tsakmalis , Maxime Cordy , Yves Le Traon

Most of the fundamental, emergent, and phenomenological parameters of particle and nuclear physics are determined through parametric template fits. Simulations are used to populate histograms which are then matched to data. This approach is…

High Energy Physics - Phenomenology · Physics 2025-03-12 Benjamin Sluijter , Sascha Diefenbacher , Wahid Bhimji , Benjamin Nachman

Calculations of nuclei are often carried out in finite model spaces. Thus, finite-size corrections enter, and it is necessary to extrapolate the computed observables to infinite model spaces. In this work, we employ extrapolation methods…

Nuclear Theory · Physics 2019-11-25 W. G. Jiang , G. Hagen , T. Papenbrock

Based on Extreme Gradient Boosting (XGBoost) framework optimized via Bayesian hyperparameter tuning, we investigated the {\alpha}-decay energy and half-life of superheavy nuclei. By incorporating key nuclear structural features-including…

We present a novel method for controlling extrapolation in the prediction profiler in the JMP software. The prediction profiler is a graphical tool for exploring high dimensional prediction surfaces for statistical and machine learning…

Machine Learning · Statistics 2022-01-17 Jeremy Ash , Laura Lancaster , Chris Gotwalt

Due to the high complexity and technical requirements of industrial production processes, surface defects will inevitably appear, which seriously affects the quality of products. Although existing lightweight detection networks are highly…

Computer Vision and Pattern Recognition · Computer Science 2024-08-27 Xuyi Yu

Obtaining microscopic structure-property relationships for grain boundaries are challenging because of the complex atomic structures that underlie their behavior. This has led to recent efforts to obtain these relationships with machine…

Neural networks are powerful predictive models, but they provide little insight into the nature of relationships between predictors and outcomes. Although numerous methods have been proposed to quantify the relative contributions of input…

Methodology · Statistics 2023-01-30 Francesca Mandel , Ian Barnett