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Flow matching models generate high-fidelity molecular geometries but incur significant computational costs during inference, requiring hundreds of network evaluations. This inference overhead becomes the primary bottleneck when such models…

Machine Learning · Computer Science 2025-10-07 Johanna Sommer , John Rachwan , Nils Fleischmann , Stephan Günnemann , Bertrand Charpentier

\Graph similarity computation is an essential task in many real-world graph-related applications such as retrieving the similar drugs given a query chemical compound or finding the user's potential friends from the social network database.…

Machine Learning · Computer Science 2024-12-18 Jingjing Wang , Hongjie Zhu , Haoran Xie , Fu Lee Wang , Xiaoliang Xu , Yuxiang Wang

Given large amount of real photos for training, Convolutional neural network shows excellent performance on object recognition tasks. However, the process of collecting data is so tedious and the background are also limited which makes it…

Computer Vision and Pattern Recognition · Computer Science 2022-05-10 Yida Wang , Weihong Deng

Point cloud registration is a central theme in computer vision, with alignment algorithms continuously improving for greater robustness. Commonly used methods evaluate Euclidean distances between point clouds and minimize an objective…

Computer Vision and Pattern Recognition · Computer Science 2026-01-15 Emmanuele Barberi , Felice Sfravara , Filippo Cucinotta

Predicting how a drug-like molecule binds to a specific protein target is a core problem in drug discovery. An extremely fast computational binding method would enable key applications such as fast virtual screening or drug engineering.…

Biomolecules · Quantitative Biology 2022-06-07 Hannes Stärk , Octavian-Eugen Ganea , Lagnajit Pattanaik , Regina Barzilay , Tommi Jaakkola

Medical image segmentation requires large annotated datasets, creating a significant bottleneck for clinical applications. While few-shot segmentation methods can learn from minimal examples, existing approaches demonstrate suboptimal…

Computer Vision and Pattern Recognition · Computer Science 2025-12-25 Ziyuan Gao

Molecular conformation generation (MCG) is a fundamental and important problem in drug discovery. Many traditional methods have been developed to solve the MCG problem, such as systematic searching, model-building, random searching,…

Computational Engineering, Finance, and Science · Computer Science 2023-03-28 Gengmo Zhou , Zhifeng Gao , Zhewei Wei , Hang Zheng , Guolin Ke

X-ray images ease the diagnosis and treatment process due to their rapid imaging speed and high resolution. However, due to the projection process of X-ray imaging, much spatial information has been lost. To accurately provide efficient…

Image and Video Processing · Electrical Eng. & Systems 2024-08-06 Lixing Tan , Shuang Song , Yaofeng He , Kangneng Zhou , Tong Lu , Ruoxiu Xiao

The generation and completion of 3D objects represent a transformative challenge in computer vision. Generative Adversarial Networks (GANs) have recently demonstrated strong potential in synthesizing realistic visual data. However, they…

Computer Vision and Pattern Recognition · Computer Science 2026-02-10 Yahia Hamdi , Nicolas Andrialovanirina , Kélig Mahé , Emilie Poisson Caillault

Reconstructing complex 3D interfaces from indirect measurements remains a grand challenge in scientific computing, particularly for ill-posed inverse problems like Electrical Impedance Tomography (EIT). Traditional shape optimization…

Numerical Analysis · Mathematics 2026-04-23 Haibo Liu , Junqing Chen , Guang Lin

Electrical discharge machining (EDM) is a crucial process in precision manufacturing, leveraging electro-thermal energy to remove material without electrode contact. In this study, we delve into the realm of Machine Learning (ML) to enhance…

Mesoscale and Nanoscale Physics · Physics 2026-05-15 Mohsen Asghari Ilani , Yaser Mike Banad

Among various distance functions for graphs, graph and subgraph edit distances (GED and SED respectively) are two of the most popular and expressive measures. Unfortunately, exact computations for both are NP-hard. To overcome this…

Machine Learning · Computer Science 2023-04-25 Rishabh Ranjan , Siddharth Grover , Sourav Medya , Venkatesan Chakaravarthy , Yogish Sabharwal , Sayan Ranu

Addressing irregular cutting and packing (C&P) optimization problems poses two distinct challenges: the geometric challenge of determining whether or not an item can be placed feasibly at a certain position, and the optimization challenge…

Computational Geometry · Computer Science 2025-10-06 Jeroen Gardeyn , Greet Vanden Berghe , Tony Wauters

Monocular depth estimation (MDE) plays a pivotal role in various computer vision applications, such as robotics, augmented reality, and autonomous driving. Despite recent advancements, existing methods often fail to meet key requirements…

Computer Vision and Pattern Recognition · Computer Science 2025-09-29 Andrii Litvynchuk , Ivan Livinsky , Anand Ravi , Nima Kalantari , Andrii Tsarov

Fine-tuning approaches for Vision-Language Models (VLMs) face a critical three-way trade-off between In-Distribution (ID) accuracy, Out-of-Distribution (OOD) generalization, and adversarial robustness. Existing robust fine-tuning strategies…

Computer Vision and Pattern Recognition · Computer Science 2026-04-07 Shivang Chopra , Shaunak Halbe , Chengyue Huang , Brisa Maneechotesuwan , Zsolt Kira

Estimating 3D geometry from monocular colonoscopy images is challenging due to non-Lambertian surfaces, moving light sources, and large textureless regions. While recent 3D geometric foundation models eliminate the need for multi-stage…

Image and Video Processing · Electrical Eng. & Systems 2025-12-01 Zhiyi Jiang , Yifu Wang , Xuelian Cheng , Zongyuan Ge

Predicting 3D shapes and poses of static objects from a single RGB image is an important research area in modern computer vision. Its applications range from augmented reality to robotics and digital content creation. Typically this task is…

Computer Vision and Pattern Recognition · Computer Science 2021-11-11 Florian Langer , Ignas Budvytis , Roberto Cipolla

With the recent advances in machine learning for quantum chemistry, it is now possible to predict the chemical properties of compounds and to generate novel molecules. Existing generative models mostly use a string- or graph-based…

Biomolecules · Quantitative Biology 2020-10-14 Vitali Nesterov , Mario Wieser , Volker Roth

Accurate reconstruction of arbitrary-shaped long slender continuum bodies, such as guidewires, catheters and other soft continuum manipulators, is essential for accurate mechanical simulation. However, existing image-based reconstruction…

Robotics · Computer Science 2026-03-25 Yaozhi Zhang , Shun Yu , Yugang Zhang , Yang Liu

Shape assembly aims to reassemble parts (or fragments) into a complete object, which is a common task in our daily life. Different from the semantic part assembly (e.g., assembling a chair's semantic parts like legs into a whole chair),…

Computer Vision and Pattern Recognition · Computer Science 2023-12-19 Ruihai Wu , Chenrui Tie , Yushi Du , Yan Zhao , Hao Dong