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A network is a composition of many communities, i.e., sets of nodes and edges with stronger relationships, with distinct and overlapping properties. Community detection is crucial for various reasons, such as serving as a functional unit of…

Machine Learning · Computer Science 2021-01-19 Isa Inuwa-Dutse , Mark Liptrott , Yannis Korkontzelos

Motivated by recent findings, we discuss the existence of a direct and robust mechanism providing discontinuous absorbing transitions in short range systems with single species, with no extra symmetries or conservation laws. We consider…

Statistical Mechanics · Physics 2014-02-10 Carlos E. Fiore

Accurate biodiversity monitoring is essential for effective environmental policy, yet current practices often rely on arbitrarily defined ecosystems, communities, and ad-hoc indicator species, limiting cost-efficiency and reproducibility.…

Applications · Statistics 2025-12-02 Braden Scherting , Otso Ovaskainen , Tomas Roslin , David B. Dunson

While previous multimodal slow-thinking methods have demonstrated remarkable success in single-image understanding scenarios, their effectiveness becomes fundamentally constrained when extended to more complex multi-image comprehension…

Computer Vision and Pattern Recognition · Computer Science 2025-12-05 Guanghao Zhang , Tao Zhong , Yan Xia , Mushui Liu , Zhelun Yu , Haoyuan Li , Wanggui He , Fangxun Shu , Dong She , Yi Wang , Hao Jiang

The Anthropocene is characterized by close interdependencies between the natural Earth system and the human society, posing novel challenges to model development. Here we present a conceptual model describing the long-term coevolution of…

Physics and Society · Physics 2017-02-06 Jan Nitzbon , Jobst Heitzig , Ulrich Parlitz

Ecosystems are commonly conceptualized as networks of interacting species. However, partitioning natural diversity of organisms into discrete units is notoriously problematic, and mounting experimental evidence raises the intriguing…

Populations and Evolution · Quantitative Biology 2017-09-22 Mikhail Tikhonov

We present an alternative domain concerning mathematics to investigate universal evolution mechanisms by focusing on large cycles theory (LCT) - a simplified version of well-known hamiltonian graph theory. LCT joins together a number of…

Combinatorics · Mathematics 2012-12-18 Zh. G. Nikoghosyan

Microbial communities routinely have several alternative stable states observed for the same environmental parameters. Sudden and irreversible transitions between these states make external manipulation of these systems more complicated. To…

Populations and Evolution · Quantitative Biology 2018-10-12 Veronika Dubinkina , Yulia Fridman , Parth Pandey , Sergei Maslov

In this paper we consider a microscopic model of a simple ecosystem. The basic ingredients of this model are individuals, and both the phenotypic and genotypic levels are taken in account. The model is based on a long range cellular…

Statistical Mechanics · Physics 2007-05-23 Franco Bagnoli , Michele Bezzi

For over 30 years, mode-coupling theory (MCT) has been the de facto theoretic description of dense fluids and the liquid-glass transition. MCT, however, is limited by its ad hoc construction and lacks a mechanism to institute corrections.…

Soft Condensed Matter · Physics 2015-08-12 David D. McCowan

In the present paper we study a lattice model of two species competing for the same resources. Monte Carlo simulations for d=1, 2, and 3 show that when resources are easily available both species coexist. However, when the supply of…

Populations and Evolution · Quantitative Biology 2011-03-09 Jacek Wendykier , Adam Lipowski , Antonio Luis Ferreira

The presence of one or more species at some spatial locations but not others is a central matter in ecology. This phenomenon is related to ecological pattern formation. Nonlocal interactions can be considered as one of the mechanisms…

Populations and Evolution · Quantitative Biology 2017-12-29 Ozgur Aydogmus

When a neural network can learn multiple distinct algorithms to solve a task, how does it "choose" between them during training? To approach this question, we take inspiration from ecology: when multiple species coexist, they eventually…

Machine Learning · Computer Science 2024-05-28 Xiaoman Delores Ding , Zifan Carl Guo , Eric J. Michaud , Ziming Liu , Max Tegmark

Simulations of the coevolution of many interacting species are performed using the Webworld model. The model has a realistic set of predator-prey equations that describe the population dynamics of the species for any structure of the food…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Christopher Quince , Paul G. Higgs , Alan J. McKane

Co-existence of different states is a profound concept, which possibly underlies the phase transition and the symmetry breaking. Because of a property inherent to quantum mechanics (cf. uncertainty), the co-existence is expected to appear…

Mathematical Physics · Physics 2015-06-22 Yoritaka Iwata

One of the leading theories for the origin of life includes the hypothesis according to which life would have evolved as cooperative networks of molecules. Explaining cooperation$-$and particularly, its emergence in favoring the evolution…

Statistical Mechanics · Physics 2022-02-15 Alexandre Champagne-Ruel , Paul Charbonneau

Classical approaches to analyzing dynamical systems, including bifurcation analysis, can provide invaluable insights into underlying structure of a mathematical model, and the spectrum of all possible dynamical behaviors. However, these…

Populations and Evolution · Quantitative Biology 2018-02-16 Irina Kareva

Explaining why the species lives at a particular location is important for understanding ecological systems and conserving biodiversity. However, existing ecological workflows are fragmented and often inaccessible to non-specialists. We…

Computer Vision and Pattern Recognition · Computer Science 2025-09-10 Yutong Zhou , Masahiro Ryo

Markov chains are a common framework for individual-based state and time discrete models in ecology and evolution. Their use, however, is largely limited to systems with a low number of states, since the transition matrices involved pose…

Quantitative Methods · Quantitative Biology 2014-07-10 Katja Reichel , Valentin Bahier , Cédric Midoux , Jean-Pierre Masson , Solenn Stoeckel

Explaining how competing species coexist remains a central question in ecology. The well-known competitive exclusion principle (CEP) states that two species competing for the same resource cannot stably coexist, and more generally, that the…

Biological Physics · Physics 2026-01-01 Wei Tao , Ju Kang , Wenxiu Yang , Yiyuan Niu , Xin Wang
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