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Related papers: Bivalent Kinetics: Insights from Many Body Physics

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Multistationarity in biological systems is a mechanism of cellular decision making. In particular, signaling pathways regulated by protein phosphorylation display features that facilitate a variety of responses to different biological…

Subcellular Processes · Quantitative Biology 2011-07-05 Elisenda Feliu , Carsten Wiuf

Polymorphism in the peripheral sensory system (e.g., congenital individual differences in photopigment configuration) is important in diverse research fields, ranging from evolutionary biology to engineering, because of its potential…

Neurons and Cognition · Quantitative Biology 2017-01-10 Satohiro Tajima

The exact nature of the many-body localization transition remains an open question. An aspect which has been posited in various studies is the emergence of scale invariance around this point, however the direct observation of this…

Disordered Systems and Neural Networks · Physics 2019-08-09 Johnnie Gray , Abolfazl Bayat , Arijeet Pal , Sougato Bose

Many-body systems relaxing to equilibrium can exhibit complex dynamics even if their steady state is trivial. At low temperatures or high densities their evolution is often dominated by steric hindrances affecting particle motion [1,2,3].…

Statistical Mechanics · Physics 2016-05-10 M. M. Valado , C. Simonelli , M. D. Hoogerland , I. Lesanovsky , J. P. Garrahan , E. Arimondo , D. Ciampini , O. Morsch

The applicability of computational models to the biological world is an active topic of debate. We argue that a useful path forward results from abandoning hard boundaries between categories and adopting an observer-dependent, pragmatic…

Multiagent Systems · Computer Science 2022-12-22 Joshua Bongard , Michael Levin

The organization of live cells into tissues and their subsequent biological function involves inter-cell mechanical interactions, which are mediated by their elastic environment. To model this interaction, we consider cells as spherical…

Soft Condensed Matter · Physics 2024-02-20 Roman Golkov , Yair Shokef

In the study of the thermalization of closed quantum systems, the role of kinetic constraints on the temporal dynamics and the eventual thermalization is attracting significant interest. Kinetic constraints typically lead to long-lived…

Disordered Systems and Neural Networks · Physics 2024-03-29 Karl Royen , Suman Mondal , Frank Pollmann , Fabian Heidrich-Meisner

Dynamical symmetries are of considerable importance in elucidating the complex behaviour of strongly interacting systems with many degrees of freedom. Paradigmatic examples are cooperative phenomena as they arise in phase transitions, where…

Mathematical Physics · Physics 2015-11-16 Malte Henkel

We study the one-dimensional contact process in its quantum version using a recently proposed real space renormalisation technique for stochastic many-particle systems. Exploiting the duality and other properties of the model, we can apply…

Statistical Mechanics · Physics 2009-10-31 Jef Hooyberghs , Carlo Vanderzande

We apply tools from real algebraic geometry to the problem of multistationarity of chemical reaction networks. A particular focus is on the case of reaction networks whose steady states admit a monomial parametrization. For such systems we…

Molecular Networks · Quantitative Biology 2019-08-14 Carsten Conradi , Alexandru Iosif , Thomas Kahle

Physical theories grounded in mathematical symmetries are an essential component of our understanding of a wide range of properties of the universe. Similarly, in the domain of machine learning, an awareness of symmetries such as rotation…

Theoretical research into many-body quantum systems has mostly focused on regular structures which have a small, simple unit cell and where a vanishingly small number of pairs of the constituents directly interact. Motivated by advances in…

Quantum Physics · Physics 2022-12-06 Joseph Tindall , Amy Searle , Abdulla Alhajri , Dieter Jaksch

The presence of flat bands is a source of localization in lattice systems. While flat bands are often unstable with respect to interactions between the particles, they can persist in certain cases. We consider a diamond ladder with…

Statistical Mechanics · Physics 2023-07-19 Mirko Daumann , Robin Steinigeweg , Thomas Dahm

Multivalent particles competing for binding on the same surface can exhibit switch-like behaviour, depending on the concentration of receptors on the surface. When the receptor concentration is low, energy dominates the free energy of…

Soft Condensed Matter · Physics 2016-08-24 Nicholas B. Tito , Daan Frenkel

We give an overview exploring the role of kinetics in multicomponent mixtures. Compared to the most commonly studied binary (single species plus solvent) case, multicomponent fluids show a rich interplay between kinetics and thermodynamics…

Soft Condensed Matter · Physics 2024-10-01 Filipe C. Thewes , Matthias Krüger , Peter Sollich

We investigate the velocity dependence of kinetic friction with a model which makes minimal assumptions on the actual mechanism of friction so that it can be applied at many scales provided the system involves multi-contact friction. Using…

Statistical Mechanics · Physics 2011-05-02 Oleg Braun , Michel Peyrard

A surprising "duality" of the Newton equation with time-dependent forces and the stationary Schroedinger equation is discussed. Wide classes of exact solutions not known before for few-body Newton equations are generated directly from…

Quantum Physics · Physics 2007-05-23 B. N. Zakhariev , V. M. Chabanov

Antibody-based therapeutics-including antibody-drug conjugates (ADCs), bispecific antibodies, and novel formats-are reshaping oncology, yet key determinants of efficacy, safety, and manufacturability frequently emerge after conjugation and…

Soft Condensed Matter · Physics 2026-05-18 Alberto Ocana , Jorge R. Espinosa

Complexity in biology is often described using a multi-map architecture, where the genotype, representing the encoded information, is mapped to the functional level, known as the phenotype, which is then connected to a latent phenotype we…

Other Quantitative Biology · Quantitative Biology 2024-02-06 Juan F Poyatos

For the study of complex synthetic and biological molecular systems by computer simulations one is still restricted to simple model systems or to by far too small time scales. To overcome this problem multiscale techniques are being…

Statistical Mechanics · Physics 2007-05-23 Matej Praprotnik , Kurt Kremer , Luigi Delle Site