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Microbial communities harbor extensive fine-scale diversity: closely-related strains of the same species coexist alongside many distantly-related taxa. Yet strain coexistence remains poorly understood, largely because most studies neglect…

Populations and Evolution · Quantitative Biology 2026-03-17 Naven Narayanan Venkatanarayanan , Akshit Goyal

Evolution is the theory that plants and animals today have come from kinds that have existed in the past. Scientists such as Charles Darwin and Alfred Wallace dedicate their life to observe how species interact with their environment, grow,…

Neural and Evolutionary Computing · Computer Science 2022-09-16 Manasa Josyula

In order to understand the role of space in ecological communities where each species produces a certain type of resource and has varying abilities to exploit the resources produced by its own species and by the other species, we carry out…

Dynamical Systems · Mathematics 2011-02-14 Yun Kang , Nicolas Lanchier

Predicting protein-protein interactions from sequences is an important goal of computational biology. Various sources of information can be used to this end. Starting from the sequences of two interacting protein families, one can use…

Biomolecules · Quantitative Biology 2023-04-26 Carlos A. Gandarilla-Perez , Sergio Pinilla , Anne-Florence Bitbol , Martin Weigt

Despite the general acknowledgment of the role of niche and fitness differences in community dynamics, species abundance has been coined as a relevant feature not just regarding niche perspectives, but also according to neutral…

Populations and Evolution · Quantitative Biology 2013-11-08 Rafael D Guariento

In order to model real ecological systems one has to consider many species that interact in complex ways. However, most of the recent theoretical studies have been restricted to few species systems with rather trivial interactions. The few…

Populations and Evolution · Quantitative Biology 2014-04-11 Shahir Mowlaei , Ahmed Roman , Michel Pleimling

In this letter, a novel method for change detection is proposed using neighborhood structure correlation. Because structure features are insensitive to the intensity differences between bi-temporal images, we perform the correlation…

Computer Vision and Pattern Recognition · Computer Science 2023-02-13 Mengmeng Wang , Zhiqiang Han , Peizhen Yang , Bai Zhu , Ming Hao , Jianwei Fan , Yuanxin Ye

In this paper we propose a Moran model that describes the population dynamics of two types: While the first type has a selective advantage during reproduction, the second type can avoid replacement during reproduction with some positive…

Populations and Evolution · Quantitative Biology 2026-03-02 Jochen Blath , Baptiste Le Duigou , András Tóbiás

Empirical observations show that ecological communities can have a huge number of coexisting species, also with few or limited number of resources. These ecosystems are characterized by multiple type of interactions, in particular…

Populations and Evolution · Quantitative Biology 2018-05-18 Chengyi Tu , Samir Suweis , Jacopo Grillib , Marco Formentin , Amos Maritan

Empirical observations show that ecological communities can have a huge number of coexisting species, also with few or limited number of resources. These ecosystems are characterized by multiple type of interactions, in particular…

Populations and Evolution · Quantitative Biology 2018-05-21 Chengyi Tu , Samir Suweis , Jacopo Grilli , Marco Formentin , Amos Maritan

The prevalence of many urban phenomena changes systematically with population size. We propose a theory that unifies models of economic complexity and cultural evolution to derive urban scaling. The theory accounts for the difference in…

Physics and Society · Physics 2016-12-28 Andres Gomez-Lievano , Oscar Patterson-Lomba , Ricardo Hausmann

We introduce an asymmetric noisy voter model to study the joint effect of immigration and a competition-dispersal tradeoff in the dynamics of two species competing for space in regular lattices. Individuals of one species can invade a…

Populations and Evolution · Quantitative Biology 2021-03-17 Ricardo Martinez-Garcia , Cristóbal López , Federico Vazquez

Artificial ecosystems provide an additional experimental tool to support laboratory work, field work, and theoretical development in competitive exclusion research. A novel application of a spatiotemporal agent based model is presented…

Populations and Evolution · Quantitative Biology 2023-06-01 John C. Stevenson

We study the spreading of families in two-dimensional multispecies predator-prey systems, in which species cyclically dominate each other. In each time step randomly chosen individuals invade one of the nearest sites of the square lattice…

Populations and Evolution · Quantitative Biology 2009-11-10 Maria Ravasz , Gyorgy Szabo , Attila Szolnoki

This paper investigates the competition of two species in a heterogeneous environment subject to the effect of harvesting. The most realistic harvesting case is connected with the intrinsic growth rate, and the harvesting functions are…

Predicting species persistence within ecological communities is a fundamental challenge for both empirical and theoretical ecology. Existing methods span from mechanistic models, whose parameters are difficult to estimate from data, to…

Populations and Evolution · Quantitative Biology 2026-04-30 Davide Bernardi , Giorgio Nicoletti , Prajwal Padmanabha , Samir Suweis , Sandro Azaele , Simon A. Levin , Andrea Rinaldo , Amos Maritan

Understanding why we age is a long-lived open problem in evolutionary biology. Aging is prejudicial to the individual and evolutionary forces should prevent it, but many species show signs of senescence as individuals age. Here, I will…

Populations and Evolution · Quantitative Biology 2012-01-24 André C. R. Martins

In many indigenous societies, people are categorised into several cultural groups, or clans, within which they believe to share ancestors. Clan attributions provide certain rules for marriage and descent. Such rules between clans constitute…

Physics and Society · Physics 2021-12-07 Kenji Itao , Kunihiko kaneko

This paper investigates the coexistence of two competing species on random geometric graphs (RGGs) in continuous time. The species grow by occupying vacant sites according to Richardson's model, while simultaneously competing for occupied…

Probability · Mathematics 2025-01-28 Cristian F. Coletti , Lucas R. de Lima

Invasive pine trees pose a threat to biodiversity in a variety of Southern Hemisphere countries, but understanding of the dynamics of invasions and the factors that retard or accelerate spread is limited. Here, we consider the past models…

Populations and Evolution · Quantitative Biology 2023-08-04 Elliott Hughes , Miguel Moyers-Gonzalez , Rua Murray , Phillip L. Wilson