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Given a graph $G$, the maximal induced subgraphs problem asks to enumerate all maximal induced subgraphs of $G$ that belong to a certain hereditary graph class. While its optimization version, known as the minimum vertex deletion problem in…
The structure of Markov equivalence classes (MECs) of causal DAGs has been studied extensively. A natural question in this regard is to algorithmically find the number of MECs with a given skeleton. Until recently, the known results for…
The independence number of a tree decomposition is the size of a largest independent set contained in a single bag. The tree-independence number of a graph $G$ is the minimum independence number of a tree decomposition of $G$. As shown…
An elastic-degenerate string is a sequence of $n$ finite sets of strings of total length $N$, introduced to represent a set of related DNA sequences, also known as a pangenome. The ED string matching (EDSM) problem consists in reporting all…
In this paper we study the problem of maintaining the strongly connected components of a graph in the presence of failures. In particular, we show that given a directed graph $G=(V,E)$ with $n=|V|$ and $m=|E|$, and an integer value $k\geq…
The transversal hypergraph problem is the task of enumerating the minimal hitting sets of a hypergraph. It is a long-standing open question whether this can be done in output-polynomial time. For hypergraphs whose solutions have bounded…
We consider the problem of testing graph cluster structure: given access to a graph $G=(V, E)$, can we quickly determine whether the graph can be partitioned into a few clusters with good inner conductance, or is far from any such graph?…
Given a family $\mathcal{F}$ of graphs, a graph is \emph{$\mathcal{F}$-subgraph-free} if it has no subgraph isomorphic to a member of $\mathcal{F}$. We present a fixed-parameter linear-time algorithm that decides whether a planar graph can…
The problem of Text Indexing is a fundamental algorithmic problem in which one wishes to preprocess a text in order to quickly locate pattern queries within the text. In the ever evolving world of dynamic and on-line data, there is also a…
Sorting is a fundamental algorithmic pre-processing technique which often allows to represent data more compactly and, at the same time, speeds up search queries on it. In this paper, we focus on the well-studied problem of sorting and…
In this note we describe an application of low-high orders in fault-tolerant network design. Baswana et al. [DISC 2015] study the following reachability problem. We are given a flow graph $G = (V, A)$ with start vertex $s$, and a spanning…
The resiliency of a network is its ability to remain \emph{effectively} functioning also when any of its nodes or links fails. However, to reduce operational and set-up costs, a network should be small in size, and this conflicts with the…
Suppose we are given an $n$-node, $m$-edge input graph $G$, and the goal is to compute a spanning subgraph $H$ on $O(n)$ edges. This can be achieved in linear $O(m + n)$ time via breadth-first search. But can we hope for \emph{sublinear}…
The restoration lemma by Afek, Bremler-Barr, Kaplan, Cohen, and Merritt [Dist. Comp. '02] proves that, in an undirected unweighted graph, any replacement shortest path avoiding a failing edge can be expressed as the concatenation of two…
In real-world scenarios, although data entities may possess inherent relationships, the specific graph illustrating their connections might not be directly accessible. Latent graph inference addresses this issue by enabling Graph Neural…
Constructing a spanning tree of a graph is one of the most basic tasks in graph theory. Motivated by several recent studies of local graph algorithms, we consider the following variant of this problem. Let G be a connected bounded-degree…
Effective resistances are ubiquitous in graph algorithms and network analysis. In this work, we study sublinear time algorithms to approximate the effective resistance of an adjacent pair $s$ and $t$. We consider the classical adjacency…
Suffix trees are key and efficient data structure for solving string problems. A suffix tree is a compressed trie containing all the suffixes of a given text of length $n$ with a linear construction cost. In this work, we introduce an…
The maximum common subtree isomorphism problem asks for the largest possible isomorphism between subtrees of two given input trees. This problem is a natural restriction of the maximum common subgraph problem, which is ${\sf NP}$-hard in…
We provide a data structure for maintaining an embedding of a graph on a surface (represented combinatorially by a permutation of edges around each vertex) and computing generators of the fundamental group of the surface, in amortized time…