English
Related papers

Related papers: Contact-mediated signaling enables disorder-driven…

200 papers

For networks of pulse-coupled oscillators with complex connectivity, we demonstrate that in the presence of coupling heterogeneity precisely timed periodic firing patterns replace the state of global synchrony that exists in homogenous…

Disordered Systems and Neural Networks · Physics 2009-11-10 Michael Denker , Marc Timme , Markus Diesmann , Fred Wolf , Theo Geisel

The origin of nonlinear responses in cells has been suggested to be crucial for various cell functions including the propagation of the nervous impulse. In physics nonlinear behavior often originates from phase transitions. Evidence for…

Biological Physics · Physics 2022-11-23 Carina S. Fedosejevs , Matthias F. Schneider

We typically think of cells as responding to external signals independently by regulating their gene expression levels, yet they often locally exchange information and coordinate. Can such spatial coupling be of benefit for conveying…

Molecular Networks · Quantitative Biology 2015-01-19 Thomas R. Sokolowski , Gašper Tkačik

Cells with the same genome can exist in different phenotypes. and can change between distinct phenotypes when subject to specific stimuli and microenvironments. Some examples include cell differentiation during development, reprogramming…

Quantitative Methods · Quantitative Biology 2022-09-28 Jianhua Xing

Cellular differentiation in a developping organism is studied via a discrete bistable reaction-diffusion model. A system of undifferentiated cells is allowed to receive an inductive signal emenating from its environment. Depending on the…

Pattern Formation and Solitons · Physics 2009-11-10 Gabor Fath , Zbigniew Domanski

Collective cell migration is a key driver of embryonic development, wound healing, and some types of cancer invasion. Here we provide a physical perspective of the mechanisms underlying collective cell migration. We begin with a catalogue…

Biological Physics · Physics 2019-10-08 Ricard Alert , Xavier Trepat

Yet often neglected, dynamical interdependencies between concomitant contagion processes can alter their intrinsic equilibria and bifurcations. A particular case of interest for disease control is the emergence of explosive transitions in…

Physics and Society · Physics 2023-12-04 Santiago Lamata-Otín , Jesús Gómez-Gardeñes , David Soriano-Paños

Many cellular processes require a polarization axis which generally initially emerges as an inhomogeneous distribution of molecular markers in the cell. We present a simple analytical model of a general mechanism of cell polarization taking…

Cell Behavior · Quantitative Biology 2009-10-21 Rhoda J. Hawkins , Olivier Benichou , Matthieu Piel , Raphael Voituriez

Intracellular signaling often arises from ligand-induced oligomerization of cell surface receptors. This oligomerization or clustering process is fundamentally a cooperative behavior between near-neighbor receptor molecules; the properties…

Soft Condensed Matter · Physics 2009-10-31 Chinlin Guo , Herbert Levine

The persistence of biodiversity of species is a challenging proposition in ecological communities in the face of Darwinian selection. The present article investigates beyond the pairwise competitive interactions and provides a novel…

Populations and Evolution · Quantitative Biology 2022-11-09 Sourin Chatterjee , Sayantan Nag Chowdhury , Dibakar Ghosh , Chittaranjan Hens

We identify a mechanism for biological spatial pattern formation arising when the signals that mediate interactions between individuals in a population have pulsed character. Our general population-signal framework shows that while for a…

Populations and Evolution · Quantitative Biology 2023-08-15 Eduardo H. Colombo , Cristóbal López , Emilio Hernández-García

The dynamic behavior of microtubules in solution can be strongly modified by interactions with walls or other structures. We examine here a microtubule growth model where the increase in size of the plus-end is perturbed by collisions with…

Soft Condensed Matter · Physics 2010-09-29 Vladimir A. Baulin , Carlos M. Marques , Fabrice Thalmann

Contact inhibition limits migration and proliferation of cells in cell colonies. We consider a multiphase field model to investigate the growth dynamics of a cell colony, composed of proliferating cells. The model takes into account the…

Soft Condensed Matter · Physics 2022-03-14 Harish P. Jain , Dennis Wenzel , Axel Voigt

The interplay of interactions and disorder is studied using the Anderson-Hubbard model within the typical medium dynamical cluster approximation. Treating the interacting, non-local cluster self-energy ($\Sigma_c[{\cal \tilde{G}}](i,j\neq…

Disordered Systems and Neural Networks · Physics 2015-12-02 C. E. Ekuma , S. -X. Yang , H. Terletska , K. -M. Tam , N. S. Vidhyadhiraja , J. Moreno , M. Jarrell

We consider the decision making by mammalian cells, looking them as dynamic systems with rhythms. We calculate the effective dimension of the cell division model of the healthy mammalian cells consistent with the data: it is described via a…

Cell Behavior · Quantitative Biology 2015-12-18 David B. Saakian

Flocking models with metric and topological interactions are supposed to exhibit distinct features, as for instance the presence and absence of moving polar bands. On the other hand, quenched disorder (spatial heterogeneities) has been…

Biological Physics · Physics 2022-01-04 Parisa Rahmani , Fernando Peruani , Pawel Romanczuk

Transmission through disordered samples can be controlled by illuminating a sample with waveforms corresponding to the eigenchannels of the transmission matrix. But can the TM be exploited to selectively excite quasi-normal modes and so…

Classical Physics · Physics 2018-11-21 Matthieu Davy , Azriel Z. Genack

Communicating cells can coordinate their gene expressions to form spatial patterns. 'Secrete-and-sense cells' secrete and sense the same molecule to do so and are ubiquitous. Here we address why and how these cells, from disordered…

Quantitative Methods · Quantitative Biology 2018-06-05 Eduardo P. Olimpio , Yiteng Dang , Hyun Youk

Phase transitions constitute fundamental mechanisms underlying abrupt or qualitative changes in the collective dynamics of interacting units across a wide range of natural and engineered systems. In dynamical networks, such transitions lead…

Adaptation and Self-Organizing Systems · Physics 2026-04-07 R. Anand , Jan Fialkowski , V. K. Chandrasekar , R. Suresh

The dynamic interplay between collective cell movement and the various molecules involved in the accompanying cell signalling mechanisms plays a crucial role in many biological processes including normal tissue development and pathological…

Cell Behavior · Quantitative Biology 2016-07-20 Pia Domschke , Dumitru Trucu , Alf Gerisch , Mark A. J. Chaplain