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We propose a marginal super-resolution (MSR) approach based on 2D convolutional neural networks (CNNs) for interpolating an anisotropic brain magnetic resonance scan along the highly under-sampled direction, which is assumed to axial…

Image and Video Processing · Electrical Eng. & Systems 2019-08-16 Cheng Peng , Wei-An Lin , Haofu Liao , Rama Chellappa , S. Kevin Zhou

We propose a novel method for establishing correspondence between two sequences of 2D images. One particular application of this technique is slice-level content navigation, where the goal is to localize specific 2D slices within a 3D…

Computer Vision and Pattern Recognition · Computer Science 2026-02-16 Dingjie Su , Weixiang Hong , Benoit M. Dawant , Bennett A. Landman

Precise identification of spinal nerve rootlets is relevant to delineate spinal levels for the study of functional activity in the spinal cord. The goal of this study was to develop an automatic method for the semantic segmentation of…

Computer Vision and Pattern Recognition · Computer Science 2024-07-26 Jan Valosek , Theo Mathieu , Raphaelle Schlienger , Olivia S. Kowalczyk , Julien Cohen-Adad

Purpose: An end-to-end deep convolutional neural network (CNN) based on deep residual network (ResNet) was proposed to efficiently reconstruct reliable T2 mapping from single-shot OverLapping-Echo Detachment (OLED) planar imaging. Methods:…

Computer Vision and Pattern Recognition · Computer Science 2017-08-18 Congbo Cai , Yiqing Zeng , Chao Wang , Shuhui Cai , Jun Zhang , Zhong Chen , Xinghao Ding , Jianhui Zhong

A cascaded multi-planar scheme with a modified residual U-Net architecture was used to segment thalamic nuclei on conventional and white-matter-nulled (WMn) magnetization prepared rapid gradient echo (MPRAGE) data. A single network was…

Image and Video Processing · Electrical Eng. & Systems 2020-08-26 Mohammad S Majdi , Mahesh B Keerthivasan , Brian K Rutt , Natalie M Zahr , Jeffrey J Rodriguez , Manojkumar Saranathan

Introduction: Quantitative MRI techniques such as T2 and T1\r{ho} mapping are beneficial in evaluating knee joint pathologies; however, long acquisition times limit their clinical adoption. MIXTURE (Multi-Interleaved X-prepared Turbo-Spin…

We consider a missing data problem in the context of automatic segmentation methods for Magnetic Resonance Imaging (MRI) brain scans. Usually, automated MRI scan segmentation is based on multiple scans (e.g., T1-weighted, T2-weighted, T1CE,…

Image and Video Processing · Electrical Eng. & Systems 2024-05-06 Giulia Baldini , Melanie Schmidt , Charlotte Zäske , Liliana L. Caldeira

To super-resolve the through-plane direction of a multi-slice 2D magnetic resonance (MR) image, its slice selection profile can be used as the degeneration model from high resolution (HR) to low resolution (LR) to create paired data when…

Computer Vision and Pattern Recognition · Computer Science 2021-04-02 Shuo Han , Samuel Remedios , Aaron Carass , Michael Schär , Jerry L. Prince

We propose a novel compressed sensing technique to accelerate the magnetic resonance imaging (MRI) acquisition process. The method, coined spread spectrum MRI or simply s2MRI, consists of pre-modulating the signal of interest by a linear…

Other Computer Science · Computer Science 2012-03-13 Gilles Puy , Jose P. Marques , Rolf Gruetter , Jean-Philippe Thiran , Dimitri Van De Ville , Pierre Vandergheynst , Yves Wiaux

Diffusion MRI (dMRI) is a unique imaging technique for in vivo characterization of tissue microstructure and white matter pathways. However, its relatively long acquisition time implies greater motion artifacts when imaging, for example,…

Medical Physics · Physics 2020-02-26 Yoonmi Hong , Wei-Tang Chang , Geng Chen , Ye Wu , Weili Lin , Dinggang Shen , Pew-Thian Yap

Purpose: Long scan time in phase encoding for forming complete K-space matrices is a critical drawback of MRI, making patients uncomfortable and wasting important time for diagnosing emergent diseases. This paper aims to reducing the scan…

Computer Vision and Pattern Recognition · Computer Science 2022-03-14 Yiming Liu , Yanwei Pang , Ruiqi Jin , Zhenchang Wang

Automated segmentation of medical images heavily relies on the availability of precise manual annotations. However, generating these annotations is often time-consuming, expensive, and sometimes requires specialized expertise (especially…

Computer Vision and Pattern Recognition · Computer Science 2025-04-08 Yixin Zhang , Kevin Kramer , Maciej A. Mazurowski

Purpose: The purpose of this study is to demonstrate a method for Specific Absorption Rate (SAR) reduction for T2-FLAIR MRI sequences at 7T by predicting the required adiabatic pulse power and scaling the amplitude in a slice-wise fashion.…

Image and Video Processing · Electrical Eng. & Systems 2020-11-25 Shahrokh Abbasi-Rad , Kieran O'Brien , Samuel Kelly , Viktor Vegh , Anders Rodell , Yasvir Tesiram , Jin Jin , Markus Barth , Steffen Bollmann

Motivation: Conventional echo planar imaging(EPI) based functional MRI(fMRI) uses the BOLD contrast to map activity changes in human brains. Introducing an efficient ZTE sequence for functional brain mapping can help address limitations of…

Medical Physics · Physics 2025-10-28 Ali Caglar Ozen , Shuai Liu , Serhat Ilbey , Michael Bock , Uzay Emir , Yen-Yu Ian Shih

To rapidly obtain high resolution T2, T2* and quantitative susceptibility mapping (QSM) source separation maps with whole-brain coverage and high geometric fidelity. We propose Blip Up-Down Acquisition for Spin And Gradient Echo imaging…

High-quality magnetic resonance (MR) image, i.e., with near isotropic voxel spacing, is desirable in various scenarios of medical image analysis. However, many MR acquisitions use large inter-slice spacing in clinical practice. In this…

Image and Video Processing · Electrical Eng. & Systems 2021-08-18 Kai Xuan , Liping Si , Lichi Zhang , Zhong Xue , Yining Jiao , Weiwu Yao , Dinggang Shen , Dijia Wu , Qian Wang

Purpose: To develop a method for rapid sub-millimeter T1, T2, T2* and QSM mapping in a single scan using multi-contrast Learned Acquisition and Reconstruction Optimization (mcLARO). Methods: A pulse sequence was developed by interleaving…

Image and Video Processing · Electrical Eng. & Systems 2023-11-28 Jinwei Zhang , Thanh D. Nguyen , Eddy Solomon , Chao Li , Qihao Zhang , Jiahao Li , Hang Zhang , Pascal Spincemaille , Yi Wang

Purpose: To develop a 3D distortion-free reduced-FOV diffusion-prepared GRE sequence and demonstrate its in-vivo application for diffusion imaging of the spinal cord in healthy volunteers. Methods: A 3D multi-shot reduced-FOV…

Electron spin resonance scanning tunneling microscopy (ESR-STM) has become a powerful tool for probing spin dynamics and coherence of individual atoms and molecules on surfaces. In this work, we perform Rabi oscillation and Hahn echo pulse…

Mesoscale and Nanoscale Physics · Physics 2026-03-30 Paul Greule , Wantong Huang , Máté Stark , Kwan Ho Au-Yeung , Christoph Wolf , Soo-hyon Phark , Andreas J. Heinrich , Philip Willke

The thick-slice magnetic resonance (MR) images are often structurally blurred in coronal and sagittal views, which causes harm to diagnosis and image post-processing. Deep learning (DL) has shown great potential to re-construct the…

Image and Video Processing · Electrical Eng. & Systems 2021-06-30 Zhiyang Lu , Zheng Li , Jun Wang , Jun shi , Dinggang Shen