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Molecular dynamics simulations are used to study structure formation in simple model polymer chains that are subject to excluded volume and torsional interactions. The changing conformations exhibited by chains of different lengths under…

Soft Condensed Matter · Physics 2009-11-07 D. C. Rapaport

A new Markov Chain Monte Carlo method for simulating the dynamics of molecular systems characterized by hard-core interactions is introduced. In contrast to traditional Kinetic Monte Carlo approaches, where the state of the system is…

Computational Physics · Physics 2017-02-07 Liborio I. Costa

I compare various popular and unpopular techniques for simulating large collisionless stellar systems. I give a quantitative comparison of the raw cpu times required for five separate codes, including tree codes and basis function…

Astrophysics · Physics 2008-02-03 J A Sellwood

We propose a methodology to infer collision operators from phase space data of plasma dynamics. Our approach combines a differentiable kinetic simulator, whose core component in this work is a differentiable Fokker-Planck solver, with a…

Plasma Physics · Physics 2026-01-19 Diogo D. Carvalho , Pablo J. Bilbao , Warren B. Mori , Luis O. Silva , E. Paulo Alves

Understanding active matter has led to new perspectives on biophysics and non-equilibrium dynamics. However, the development of numerical tools for simulating active fluids capable of incorporating non-trivial boundaries or inclusions has…

Soft Condensed Matter · Physics 2024-02-01 Timofey Kozhukhov , Benjamin Loewe , Tyler N. Shendruk

Accurate phase diagrams of multicomponent plasmas are required for the modeling of dense stellar plasmas, such as those found in the cores of white dwarf stars and the crusts of neutron stars. Those phase diagrams have been computed using a…

Plasma Physics · Physics 2021-04-21 Simon Blouin , Jerome Daligault

High-multiplicity Kepler systems (referred to as Kepler multis) are often tightly packed and may be on the verge of instability. Many systems of this type could have experienced past instabilities, where the compact orbits and often low…

Earth and Planetary Astrophysics · Physics 2017-08-02 Jason A. Hwang , Jason H. Steffen , James C. Lombardi , Frederic A. Rasio

The quantum collision models are a useful method to describe the dynamics of an open quantum system by means of repeated interactions between the system and some particles of the environment, which are usually termed "ancillas". In this…

Quantum Physics · Physics 2023-01-10 Marco Cattaneo , Gian Luca Giorgi , Roberta Zambrini , Sabrina Maniscalco

We use computer simulations to study the dynamics of a physical gel at high densities where gelation and the glass transition interfere. We report and provide detailed physical understanding of complex relaxation patterns for time…

Soft Condensed Matter · Physics 2010-05-07 Pinaki Chaudhuri , Ludovic Berthier , Pablo I. Hurtado , Walter Kob

With advances in scientific computing and mathematical modeling, complex scientific phenomena such as galaxy formations and rocket propulsion can now be reliably simulated. Such simulations can however be very time-intensive, requiring…

Methodology · Statistics 2024-02-29 Yi Ji , Simon Mak , Derek Soeder , J-F Paquet , Steffen A. Bass

Discrete particle simulations have become the standard in science and industrial applications exploring the properties of particulate systems. Most of such simulations rely on the concept of interacting spherical particles to describe the…

Numerical Analysis · Mathematics 2023-11-01 Igor Ostanin , Vasileios Angelidakis , Timo Plath , Sahar Pourandi , Anthony Thornton , Thomas Weinhart

It was recently demonstrated that a simple Monte Carlo (MC) algorithm involving the swap of particle pairs dramatically accelerates the equilibrium sampling of simulated supercooled liquids. We propose two numerical schemes integrating the…

Statistical Mechanics · Physics 2019-06-24 Ludovic Berthier , Elijah Flenner , Christopher J. Fullerton , Camille Scalliet , Murari Singh

We present molecular dynamics (MD) simulations results for dense fluids of ultrasoft, fully-penetrable particles. These are a binary mixture and a polydisperse system of particles interacting via the generalized exponential model, which is…

Soft Condensed Matter · Physics 2012-12-24 Daniele Coslovich , Marco Bernabei , Angel J. Moreno

Stellar collisions can occur frequently in dense cluster environments, and play a crucial role in producing exotic phenomena from blue stragglers in globular clusters to high-energy transients in galactic nuclei. Successive collisions and…

We summarize the results of numerical simulations of colliding gas-rich disk galaxies in which the impact velocity is set parallel to the spin axes of the two galaxies. The effects of varying the impact speed are studied with particular…

Astrophysics · Physics 2009-11-07 Susan A. Lamb , Nathan C. Hearn

The dynamics of open quantum systems (i.e., of quantum systems interacting with an uncontrolled environment) forms the basis of numerous active areas of research from quantum thermodynamics to quantum computing. One approach to modeling…

Quantum Physics · Physics 2020-09-23 Daniel Grimmer

We study parallel particle-in-cell (PIC) methods for low-temperature plasmas (LTPs), which discretize kinetic formulations that capture the time evolution of the probability density function of particles as a function of position and…

Computational Engineering, Finance, and Science · Computer Science 2025-08-12 James Almgren-Bell , Nader Al Awar , Dilip S Geethakrishnan , Milos Gligoric , George Biros

Collisional relaxation of Coulomb systems is studied in the strongly coupled regime. We use an optical pump-probe approach to manipulate and monitor the dynamics of ions in an ultracold neutral plasma, which allows direct measurement of…

Plasma Physics · Physics 2013-02-26 G. Bannasch , J. Castro , P. McQuillen , T. Pohl , T. C. Killian

We present an efficient method to perform overdamped Brownian dynamics simulations in external force fields and for particle interactions that include a hardcore part. The method applies to particle motion in one dimension, where it is…

Statistical Mechanics · Physics 2026-02-23 Alexander P. Antonov , Sören Schweers , Artem Ryabov , Philipp Maass

Soft particles at fluid interfaces play an important role in many aspects of our daily life, such as the food industry, paints and coatings, and medical applications. Analytical methods are not capable of describing the emergent effects of…

Computational Physics · Physics 2019-09-25 Maarten Wouters , Othmane Aouane , Timm Krueger , Jens Harting