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Large language models (LLMs) have performed well across various clinical natural language processing tasks, despite not being directly trained on electronic health record (EHR) data. In this work, we examine how popular open-source LLMs…

Computation and Language · Computer Science 2025-05-26 Furong Jia , David Sontag , Monica Agrawal

The recommendation of medication is a vital aspect of intelligent healthcare systems, as it involves prescribing the most suitable drugs based on a patient's specific health needs. Unfortunately, many sophisticated models currently in use…

Information Retrieval · Computer Science 2025-01-28 Qidong Liu , Xian Wu , Xiangyu Zhao , Yuanshao Zhu , Zijian Zhang , Feng Tian , Yefeng Zheng

In this work, we examine the extent to which embeddings may encode marginalized populations differently, and how this may lead to a perpetuation of biases and worsened performance on clinical tasks. We pretrain deep embedding models (BERT)…

Computation and Language · Computer Science 2020-03-26 Haoran Zhang , Amy X. Lu , Mohamed Abdalla , Matthew McDermott , Marzyeh Ghassemi

Contrastive learning has been used to learn a high-quality representation of the image in computer vision. However, contrastive learning is not widely utilized in natural language processing due to the lack of a general method of data…

Computation and Language · Computer Science 2021-04-29 Peng Su , Yifan Peng , K. Vijay-Shanker

The unstructured nature of clinical notes within electronic health records often conceals vital patient-related information, making it challenging to access or interpret. To uncover this hidden information, specialized Natural Language…

Language Models (LMs) have performed well on biomedical natural language processing applications. In this study, we conducted some experiments to use prompt methods to extract knowledge from LMs as new knowledge Bases (LMs as KBs). However,…

Information Retrieval · Computer Science 2022-10-24 Zonghai Yao , Yi Cao , Zhichao Yang , Vijeta Deshpande , Hong Yu

With the tremendous growth in the number of scientific papers being published, searching for references while writing a scientific paper is a time-consuming process. A technique that could add a reference citation at the appropriate place…

Computation and Language · Computer Science 2019-03-18 Chanwoo Jeong , Sion Jang , Hyuna Shin , Eunjeong Park , Sungchul Choi

Background: Identifying relationships between clinical events and temporal expressions is a key challenge in meaningfully analyzing clinical text for use in advanced AI applications. While previous studies exist, the state-of-the-art…

Computation and Language · Computer Science 2020-04-15 Hong Guan , Jianfu Li , Hua Xu , Murthy Devarakonda

The objective of this study is to develop natural language processing (NLP) models that can analyze patients' drug reviews and accurately classify their satisfaction levels as positive, neutral, or negative. Such models would reduce the…

Computation and Language · Computer Science 2023-08-09 Yue Ling

Named entity recognition (NER) is frequently addressed as a sequence classification task where each input consists of one sentence of text. It is nevertheless clear that useful information for the task can often be found outside of the…

Computation and Language · Computer Science 2020-12-18 Jouni Luoma , Sampo Pyysalo

Mental health disorders impose a substantial global socioeconomic burden. While large language models (LLMs) offer 24/7, non-judgmental interactions to address this gap, pretrained models lack contextual coherence and emotional alignment…

Computation and Language · Computer Science 2026-02-17 Eric Hua Qing Zhang , Julia Ive

The rapid identification of medical emergencies through digital communication channels remains a critical challenge in modern healthcare delivery, particularly with the increasing prevalence of telemedicine. This paper presents a novel…

Machine Learning · Computer Science 2024-12-24 Ferit Akaybicen , Aaron Cummings , Lota Iwuagwu , Xinyue Zhang , Modupe Adewuyi

Recent strides in automatic speech recognition (ASR) have accelerated their application in the medical domain where their performance on accented medical named entities (NE) such as drug names, diagnoses, and lab results, is largely…

Audio and Speech Processing · Electrical Eng. & Systems 2024-06-19 Tejumade Afonja , Tobi Olatunji , Sewade Ogun , Naome A. Etori , Abraham Owodunni , Moshood Yekini

The awareness and mitigation of biases are of fundamental importance for the fair and transparent use of contextual language models, yet they crucially depend on the accurate detection of biases as a precursor. Consequently, numerous bias…

Computation and Language · Computer Science 2022-11-17 Silke Husse , Andreas Spitz

Contextual word embedding models such as ELMo (Peters et al., 2018) and BERT (Devlin et al., 2018) have dramatically improved performance for many natural language processing (NLP) tasks in recent months. However, these models have been…

Computation and Language · Computer Science 2019-06-24 Emily Alsentzer , John R. Murphy , Willie Boag , Wei-Hung Weng , Di Jin , Tristan Naumann , Matthew B. A. McDermott

Detecting dialogue breakdown in real time is critical for conversational AI systems, because it enables taking corrective action to successfully complete a task. In spoken dialog systems, this breakdown can be caused by a variety of…

Computation and Language · Computer Science 2024-04-15 Md Messal Monem Miah , Ulie Schnaithmann , Arushi Raghuvanshi , Youngseo Son

Pre-trained language models (PLMs) like BERT are being used for almost all language-related tasks, but interpreting their behavior still remains a significant challenge and many important questions remain largely unanswered. In this work,…

Computation and Language · Computer Science 2021-09-28 Samuel Stevens , Yu Su

We present a qualitative analysis of the (potentially erroneous) outputs of contextualized embedding-based methods for detecting diachronic semantic change. First, we introduce an ensemble method outperforming previously described…

Computation and Language · Computer Science 2022-09-02 Andrey Kutuzov , Erik Velldal , Lilja Øvrelid

Current grammatical error correction (GEC) models typically consider the task as sequence generation, which requires large amounts of annotated data and limit the applications in data-limited settings. We try to incorporate contextual…

Computation and Language · Computer Science 2020-01-13 Yiyuan Li , Antonios Anastasopoulos , Alan W Black

Reference errors, such as citation and quotation errors, are common in scientific papers. Such errors can result in the propagation of inaccurate information, but are difficult and time-consuming to detect, posing a significant challenge to…

Computation and Language · Computer Science 2026-04-03 Tianmai M. Zhang , Neil F. Abernethy