English
Related papers

Related papers: Neighbor2vec: an efficient and effective method fo…

200 papers

Proteins perform much of the work in living organisms, and consequently the development of efficient computational methods for protein representation is essential for advancing large-scale biological research. Most current approaches…

Quantitative Methods · Quantitative Biology 2023-06-09 Francesco Ceccarelli , Lorenzo Giusti , Sean B. Holden , Pietro Liò

The problem of measuring similarity of graphs and their nodes is important in a range of practical problems. There is a number of proposed measures, some of them being based on iterative calculation of similarity between two graphs and the…

Artificial Intelligence · Computer Science 2010-09-28 Mladen Nikolic

This study investigates the robustness of graph embedding methods for community detection in the face of network perturbations, specifically edge deletions. Graph embedding techniques, which represent nodes as low-dimensional vectors, are…

Physics and Society · Physics 2025-08-05 Zhi-Feng Wei , Pablo Moriano , Ramakrishnan Kannan

Graph embedding has become a key component of many data mining and analysis systems. Current graph embedding approaches either sample a large number of node pairs from a graph to learn node embeddings via stochastic optimization or…

Social and Information Networks · Computer Science 2019-12-20 Artem Lutov , Dingqi Yang , Philippe Cudré-Mauroux

Constructing latent vector representation for nodes in a network through embedding models has shown its practicality in many graph analysis applications, such as node classification, clustering, and link prediction. However, despite the…

Human-Computer Interaction · Computer Science 2018-08-29 Quan Li , Kristanto Sean Njotoprawiro , Hammad Haleem , Qiaoan Chen , Chris Yi , Xiaojuan Ma

Recent advancements in graph neural networks (GNNs) and heterogeneous GNNs (HGNNs) have advanced node embeddings and relationship learning for various tasks. However, existing methods often rely on domain-specific predefined meta-paths,…

Machine Learning · Computer Science 2025-08-28 Jongwoo Kim , Seongyeub Chu , Hyeongmin Park , Bryan Wong , Keejun Han , Mun Yong Yi

We investigate graph neural networks on graphs with heterophily. Some existing methods amplify a node's neighborhood with multi-hop neighbors to include more nodes with homophily. However, it is a significant challenge to set personalized…

Machine Learning · Computer Science 2022-05-17 Xiang Li , Renyu Zhu , Yao Cheng , Caihua Shan , Siqiang Luo , Dongsheng Li , Weining Qian

A collaborative network is a social network that is comprised of experts who cooperate with each other to fulfill a special goal. Analyzing this network yields meaningful information about the expertise of these experts and their subject…

Social and Information Networks · Computer Science 2021-04-14 N. Nikzad-Khasmakhi , M. A. Balafar , M. Reza Feizi-Derakhshi , Cina Motamed

Message passing has become the dominant framework in graph representation learning. The essential idea of the message-passing framework is to update node embeddings based on the information aggregated from local neighbours. However, most…

Machine Learning · Computer Science 2024-04-16 Haimin Zhang , Min Xu

Graph embedding has been widely applied in areas such as network analysis, social network mining, recommendation systems, and bioinformatics. However, current graph construction methods often require the prior definition of neighborhood…

Machine Learning · Computer Science 2025-10-08 S. Peng , L. Hu , W. Zhang , B. Jie , Y. Luo

Graph embedding, representing local and global neighborhood information by numerical vectors, is a crucial part of the mathematical modeling of a wide range of real-world systems. Among the embedding algorithms, random walk-based algorithms…

Social and Information Networks · Computer Science 2022-07-06 Sarmad N. Mohammed , Semra Gündüç

Networks are ubiquitous in the real world. Link prediction, as one of the key problems for network-structured data, aims to predict whether there exists a link between two nodes. The traditional approaches are based on the explicit…

Machine Learning · Computer Science 2021-06-01 Wei Wu , Bin Li , Chuan Luo , Wolfgang Nejdl

Node embedding is the task of extracting concise and informative representations of certain entities that are connected in a network. Various real-world networks include information about both node connectivity and certain node attributes,…

Social and Information Networks · Computer Science 2022-02-24 Charilaos I. Kanatsoulis , Nicholas D. Sidiropoulos

Graph clustering (or community detection) has long drawn enormous attention from the research on web mining and information networks. Recent literature on this topic has reached a consensus that node contents and link structures should be…

Social and Information Networks · Computer Science 2017-12-25 Carl Yang , Mengxiong Liu , Zongyi Wang , Liyuan Liu , Jiawei Han

Node embedding is the task of extracting informative and descriptive features over the nodes of a graph. The importance of node embeddings for graph analytics, as well as learning tasks such as node classification, link prediction and…

Machine Learning · Computer Science 2019-06-17 Dimitris Berberidis , Georgios B. Giannakis

Network representation learning (also known as information network embedding) has been the central piece of research in social and information network analysis for the last couple of years. An information network can be viewed as a linked…

Social and Information Networks · Computer Science 2018-07-05 Sambaran Bandyopadhyay , Harsh Kara , Anirban Biswas , M N Murty

Graph embedding is a transformation of nodes of a network into a set of vectors. A good embedding should capture the underlying graph topology and structure, node-to-node relationship, and other relevant information about the graph, its…

Social and Information Networks · Computer Science 2021-12-02 Bogumił Kamiński , Łukasz Kraiński , Paweł Prałat , François Théberge

This tutorial covers a few recent papers in the field of network embedding. Network embedding is a collective term for techniques for mapping graph nodes to vectors of real numbers in a multidimensional space. To be useful, a good embedding…

Social and Information Networks · Computer Science 2019-10-17 Boaz Shmueli

Graph Neural Network (GNN) based recommender systems have been attracting more and more attention in recent years due to their excellent performance in accuracy. Representing user-item interactions as a bipartite graph, a GNN model…

Information Retrieval · Computer Science 2022-11-29 Liangwei Yang , Shengjie Wang , Yunzhe Tao , Jiankai Sun , Xiaolong Liu , Philip S. Yu , Taiqing Wang

A graph embedding is a representation of graph vertices in a low-dimensional space, which approximately preserves properties such as distances between nodes. Vertex sequence-based embedding procedures use features extracted from linear…

Machine Learning · Computer Science 2020-01-22 Benedek Rozemberczki , Rik Sarkar