English
Related papers

Related papers: BERN2: an advanced neural biomedical named entity …

200 papers

Domain-specific named entity recognition (NER) on Computer Science (CS) scholarly articles is an information extraction task that is arguably more challenging for the various annotation aims that can beset the task and has been less studied…

Computation and Language · Computer Science 2022-11-15 Jennifer D'Souza , Sören Auer

This work investigates multiple approaches to Named Entity Recognition (NER) for text in Electronic Health Record (EHR) data. In particular, we look into the application of (i) rule-based, (ii) deep learning and (iii) transfer learning…

In this work, we formulate the NER task as a multi-answer knowledge guided QA task (KGQA) which helps to predict entities only by assigning B, I and O tags without associating entity types with the tags. We provide different knowledge…

Computation and Language · Computer Science 2020-09-21 Pratyay Banerjee , Kuntal Kumar Pal , Murthy Devarakonda , Chitta Baral

Recent advances in named entity recognition (NER) have pushed the boundary of the task to incorporate visual signals, leading to many variants, including multi-modal NER (MNER) or grounded MNER (GMNER). A key challenge to these tasks is…

Computation and Language · Computer Science 2024-04-03 Hyunjong Ok , Taeho Kil , Sukmin Seo , Jaeho Lee

NER has been traditionally formulated as a sequence labeling task. However, there has been recent trend in posing NER as a machine reading comprehension task (Wang et al., 2020; Mengge et al., 2020), where entity name (or other information)…

Machine Learning · Computer Science 2022-05-13 Anubhav Shrimal , Avi Jain , Kartik Mehta , Promod Yenigalla

FDA Medical Device recalls are critical and time-sensitive events, requiring swift identification of impacted devices to inform the public of a recall event and ensure patient safety. The OpenFDA device recall dataset contains valuable…

Computation and Language · Computer Science 2024-06-11 Miriam Farrington

There are a few challenges related to the task of biomedical named entity recognition, which are: the existing methods consider a fewer number of biomedical entities (e.g., disease, symptom, proteins, genes); and these methods do not…

Computation and Language · Computer Science 2022-07-05 Shaina Raza , Brian Schwartz

Biomedical Named Entity Recognition (BioNER) is a crucial step for analyzing Biomedical texts, which aims at extracting biomedical named entities from a given text. Different supervised machine learning algorithms have been applied for…

Computation and Language · Computer Science 2019-08-19 Hamada A. Nayel , H. L. Shashirekha , Hiroyuki Shindo , Yuji Matsumoto

We introduce the Universal Named-Entity Recognition (UNER)framework, a 4-level classification hierarchy, and the methodology that isbeing adopted to create the first multilingual UNER corpus: the SETimesparallel corpus annotated for…

Computation and Language · Computer Science 2020-10-26 Diego Alves , Tin Kuculo , Gabriel Amaral , Gaurish Thakkar , Marko Tadic

In a sentence, certain words are critical for its semantic. Among them, named entities (NEs) are notoriously challenging for neural models. Despite their importance, their accurate handling has been neglected in speech-to-text (S2T)…

Computation and Language · Computer Science 2023-03-14 Marco Gaido , Yun Tang , Ilia Kulikov , Rongqing Huang , Hongyu Gong , Hirofumi Inaguma

While neural network-based models have achieved impressive performance on a large body of NLP tasks, the generalization behavior of different models remains poorly understood: Does this excellent performance imply a perfect generalization…

Computation and Language · Computer Science 2020-01-14 Jinlan Fu , Pengfei Liu , Qi Zhang , Xuanjing Huang

Biomedical named entities often play important roles in many biomedical text mining tools. However, due to the incompleteness of provided synonyms and numerous variations in their surface forms, normalization of biomedical entities is very…

Computation and Language · Computer Science 2020-05-04 Mujeen Sung , Hwisang Jeon , Jinhyuk Lee , Jaewoo Kang

We study the open-domain named entity recognition (NER) problem under distant supervision. The distant supervision, though does not require large amounts of manual annotations, yields highly incomplete and noisy distant labels via external…

Computation and Language · Computer Science 2020-06-30 Chen Liang , Yue Yu , Haoming Jiang , Siawpeng Er , Ruijia Wang , Tuo Zhao , Chao Zhang

Named Entity Recognition (NER) is a fundamental task in Natural Language Processing (NLP) that plays a crucial role in information extraction, question answering, and knowledge-based systems. Traditional deep learning-based NER models often…

Computation and Language · Computer Science 2025-03-21 Heming Zhang , Wenyu Li , Di Huang , Yinjie Tang , Yixin Chen , Philip Payne , Fuhai Li

For languages with no annotated resources, transferring knowledge from rich-resource languages is an effective solution for named entity recognition (NER). While all existing methods directly transfer from source-learned model to a target…

Computation and Language · Computer Science 2020-07-16 Qianhui Wu , Zijia Lin , Guoxin Wang , Hui Chen , Börje F. Karlsson , Biqing Huang , Chin-Yew Lin

Named entity recognition (NER) is highly sensitive to sentential syntactic and semantic properties where entities may be extracted according to how they are used and placed in the running text. To model such properties, one could rely on…

Computation and Language · Computer Science 2020-10-30 Yuyang Nie , Yuanhe Tian , Yan Song , Xiang Ao , Xiang Wan

Named Entity Recognition is an information extraction task that serves as a preprocessing step for other natural language processing tasks, such as machine translation, information retrieval, and question answering. Named entity recognition…

Computation and Language · Computer Science 2022-07-05 Ebrahim Chekol Jibril , A. Cüneyd Tantğ

Identification of key variables such as medications, diseases, relations from health records and clinical notes has a wide range of applications in the clinical domain. n2c2 2022 provided shared tasks on challenges in natural language…

Computation and Language · Computer Science 2025-07-01 Shouvon Sarker , Xishuang Dong , Lijun Qian

Named Entity Recognition (NER) is a critical component of Natural Language Processing with diverse applications in information extraction and conversational AI. However, NER in specific domains for low-resource languages faces challenges…

Computational Engineering, Finance, and Science · Computer Science 2026-05-07 Do Minh Duc , Quan Xuan Truong , Viet Tran Hong , Le Hoang Anh , Mac Thi Minh Tra , Nguyen Van Thuy , Le Hai Ha , Vinh Nguyen Van

This paper presents a new natural language processing task - Actionable Entities Recognition (AER) - recognition of entities that protagonists could interact with for further plot development. Though similar to classical Named Entity…

Computation and Language · Computer Science 2022-11-17 Alexey Tikhonov , Ivan P. Yamshchikov