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Soil microbial fuel cells (SMFCs) are an emerging technology which offer clean and renewable energy in environments where more traditional power sources, such as chemical batteries or solar, are not suitable. With further development, SMFCs…

Signal Processing · Electrical Eng. & Systems 2024-06-26 Adam Hess-Dunlop , Harshitha Kakani , Colleen Josephson

To fight climate change and accommodate the increasing population, global crop production has to be strengthened. To achieve the "sustainable intensification" of agriculture, transforming it from carbon emitter to carbon sink is a priority,…

Machine Learning · Computer Science 2022-11-08 Georgios Giannarakis , Vasileios Sitokonstantinou , Roxanne Suzette Lorilla , Charalampos Kontoes

While it is well known that water availability controls vegetation growth and soil microbial activity, how aridity affects ecosystem carbon patterns is not completely understood. Towards a more quantitative assessment of terrestrial carbon…

Geophysics · Physics 2023-02-22 Jun Yin , Amilcare Porporato

The global population increase leads to a high food demand, and to reach this target products such as pesticides are needed to protect the crops. Research is focusing on the development of new products that can be less harmful to the…

Quantitative Methods · Quantitative Biology 2025-02-13 Enrico Sangoi , Federica Cattani , Faheem Padia , Federico Galvanin

Establishing a quantitative connection between the population growth rate and the generation times of single cells is a prerequisite for understanding evolutionary dynamics of microbes. However, existing theories fail to account for the…

Populations and Evolution · Quantitative Biology 2017-09-19 Jie Lin , Ariel Amir

Litter decomposition is an important process in the global carbon cycle. It accounts for most of the heterotrophic soil respiration and results in formation of more stable soil organic carbon (SOC) which is the largest terrestrial carbon…

Other Quantitative Biology · Quantitative Biology 2009-06-05 M. Tuomi , T. Thum , H. Järvinen , S. Fronzek , B. Berg , M. Harmon , J. A. Trofymow , S. Sevanto , J. Liski

The dynamics of microbial communities is incredibly complex, determined by competition for metabolic substrates and cross-feeding of byproducts. Species in the community grow by harvesting energy from chemical reactions that transform…

Populations and Evolution · Quantitative Biology 2022-03-22 Ashish B. George , Tong Wang , Sergei Maslov

Mechanical stresses stemming from environmental factors are a key determinant of cellular behavior and physiology. Yet, the role of self-induced biomechanical stresses in growing bacterial colonies has remained largely unexplored. Here, we…

Soft Condensed Matter · Physics 2023-11-27 René Wittmann , G. H. Philipp Nguyen , Hartmut Löwen , Fabian J. Schwarzendahl , Anupam Sengupta

Despite major environmental and genetic differences, microbial metabolic networks are known to generate consistent physiological outcomes across vastly different organisms. This remarkable robustness suggests that, at least in bacteria,…

Molecular Networks · Quantitative Biology 2022-05-24 Anna Paola Muntoni , Alfredo Braunstein , Andrea Pagnani , Daniele De Martino , Andrea De Martino

Soil organic carbon (SOC) sequestration projects require unbiased, precise and cost-effective Monitoring, Reporting, and Verification (MRV) systems that balance sampling costs against uncertainty deductions imposed by regulatory frameworks.…

Applications · Statistics 2025-10-16 Ahmad Awad , Erik Scharwächter

A novel model is here introduced for the SOC change index defined as the normalized difference between the actual Soil Organic Carbon and the value assumed at an initial reference year. It is tailored on the RothC carbon model dynamics and…

Numerical Analysis · Mathematics 2021-08-03 Fasma Diele , Ilenia Luiso , Carmela Marangi , Angela Martiradonna

Spatial patterning is common in ecological systems and has been extensively studied via different modeling approaches. Individual-based models (IBMs) accurately describe nonlinear interactions at the organism level and the stochastic…

Populations and Evolution · Quantitative Biology 2025-04-16 Anudeep Surendran , David Pinto-Ramos , Rafael Menezes , Ricardo Martinez-Garcia

Microbially Induced Carbonate Precipitation (MICP) is a biocementation technique that modifies the hydraulic and mechanical properties of porous materials using bacterial solutions. This study evaluates the efficiency of various MICP…

Biological Physics · Physics 2024-10-01 Yuze Wang , Charalampos Konstantinou

Environmental variables are increasingly affecting agricultural decision-making, yet accessible and scalable tools for soil assessment remain limited. This study presents a robust and scalable modeling system for estimating soil properties…

Computer Vision and Pattern Recognition · Computer Science 2025-12-11 David Seu , Nicolas Longepe , Gabriel Cioltea , Erik Maidik , Calin Andrei

Biological systems are promising substrates for computation because they naturally process environmental information through complex internal dynamics. In this study, we investigate whether bacterial metabolic models can act as physical…

Emerging Technologies · Computer Science 2026-04-23 Laura Alonso Bartolomé , Jean-Loup Faulon , Xavier Hinaut

Soil Organic Carbon (SOC) estimation is crucial to manage both natural and anthropic ecosystems and has recently been put under the magnifying glass after the Paris agreement 2016 due to its relationship with greenhouse gas. Statistical…

Applications · Statistics 2017-08-15 Luigi Lombardo , Sergio Saia , Calogero Schillaci , P. Martin Mai , Raphaël Huser

How morphogenesis depends on cell properties is an active direction of research. Here, we focus on mechanical models of growing plant tissues, where microscopic (sub)cellular structure is taken into account. In order to establish links…

Analysis of PDEs · Mathematics 2023-11-21 Arezki Boudaoud , Annamaria Kiss , Mariya Ptashnyk

Microbially Induced Carbonate Precipitation (MICP) shows promise for enhancing soil strength, but environmental factors significantly affect its mechanisms. The feasibility of MICP in challenging conditions, such as the soil around piles in…

Biological Physics · Physics 2024-10-01 Jianyu Yang , Yuze Wang

Sequestration of atmospheric CO$_2$ in a Mediterranean semi-arid Aleppo Pine Forest (Pinus halepensis) close to the border of the semi-arid timberline was characterized and quantified under field conditions. Measurements of organic and…

Geophysics · Physics 2026-01-06 Rafat Qubaja , Murray Moinester , Joel Kronfeld

Along with the accumulation of atmospheric carbon dioxide, the loss of primary forests and other natural ecosystems is a major disruption of the Earth system causing global concern. Quantifying planetary warming from carbon emissions,…

Atmospheric and Oceanic Physics · Physics 2024-02-28 Anastassia M. Makarieva , Andrei V. Nefiodov , Anja Rammig , Antonio Donato Nobre