Related papers: Dynamic Suffix Array with Polylogarithmic Queries …
Navarro and Sadakane [TALG 2014] gave a dynamic succinct data structure for storing an ordinal tree. The structure supports tree queries in either $O(\log n/\log\log n)$ or $O(\log n)$ time, and insertion or deletion of a single node in…
We show that the number of distinct squares in a packed string of length $n$ over an alphabet of size $\sigma$ can be computed in $O(n/\log_\sigma n)$ time in the word-RAM model. This paper is the first to introduce a sublinear-time…
Efficient text indexing data structures have enabled large-scale genomic sequence analysis and are used to help solve problems ranging from assembly to read mapping. However, these data structures typically assume that the underlying…
Let $\Sigma$ and $\Pi$ be disjoint alphabets, respectively called the static alphabet and the parameterized alphabet. Two strings $x$ and $y$ over $\Sigma \cup \Pi$ of equal length are said to parameterized match (p-match) if there exists a…
We study the exact fully dynamic shortest paths problem. For real-weighted directed graphs, we show a deterministic fully dynamic data structure with $\tilde{O}(mn^{4/5})$ worst-case update time processing arbitrary $s,t$-distance queries…
The well-known dictionary-based algorithms of the Lempel-Ziv (LZ) 77 family are the basis of several universal lossless compression techniques. These algorithms are asymmetric regarding encoding/decoding time and memory requirements, with…
We study the problem of evaluating a Monadic Second Order (MSO) query over strings under updates in the setting of direct access. We present an algorithm that, given an MSO query with first-order free variables represented by an unambiguous…
Recently it was shown that the transitive closure of a directed graph can be updated using first-order formulas after insertions and deletions of single edges in the dynamic descriptive complexity framework by Dong, Su, and Topor, and…
We consider the dynamic dictionary problem for multisets. Given an upper bound $n$ on the total cardinality of the multiset (i.e., including multiplicities) at any point in time, the goal is to design a data structure that supports…
When facing a very large stream of data, it is often desirable to extract most important statistics online in a short time and using small memory. For example, one may want to quickly find the most influential users generating posts online…
We consider dynamic algorithms for maintaining Single-Source Reachability (SSR) and approximate Single-Source Shortest Paths (SSSP) on $n$-node $m$-edge directed graphs under edge deletions (decremental algorithms). The previous fastest…
Spaced seeds are important tools for similarity search in bioinformatics, and using several seeds together often significantly improves their performance. With existing approaches, however, for each seed we keep a separate linear-size data…
We present a dynamic data structure for maintaining the persistent homology of a time series of real numbers. The data structure supports local operations, including the insertion and deletion of an item and the cutting and concatenating of…
Maximizing a monotone submodular function under cardinality constraint $k$ is a core problem in machine learning and database with many basic applications, including video and data summarization, recommendation systems, feature extraction,…
A string is said to be closed if its length is one, or if it has a non-empty factor that occurs both as a prefix and as a suffix of the string, but does not occur elsewhere. The notion of closed words was introduced by [Fici, WORDS 2011].…
Two recent lower bounds on the compressibility of repetitive sequences, $\delta \le \gamma$, have received much attention. It has been shown that a length-$n$ string $S$ over an alphabet of size $\sigma$ can be represented within the…
A fundamental question is whether one can maintain a maximum independent set in polylogarithmic update time for a dynamic collection of geometric objects in Euclidean space. Already, for a set of intervals, it is known that no dynamic…
Given a dynamic digraph $G = (V,E)$ undergoing edge deletions and given $s\in V$ and $\epsilon>0$, we consider the problem of maintaining $(1+\epsilon)$-approximate shortest path distances from $s$ to all vertices in $G$ over the sequence…
We revisit the complexity of the classical Interval Scheduling in the dynamic setting. In this problem, the goal is to maintain a set of intervals under insertions and deletions and report the size of the maximum size subset of pairwise…
While operations {\em rank} and {\em select} on static bitvectors can be supported in constant time, lower bounds show that supporting updates raises the cost per operation to $\Theta(\log n/ \log\log n)$ on bitvectors holding $n$ bits.…