Related papers: TCoMX: Tomotherapy Complexity Metrics EXtractor
The complexity of algorithms solving the motion planning problem is measured by a homotopy invariant TC(X) of the configuration space X of the system. Previously known lower bounds for TC(X) use the structure of the cohomology algebra of X.…
This paper introduces an innovative parameter extraction method for BSIM-CMG compact models, seamlessly integrating curve feature extraction and machine learning techniques. This method offers a promising solution for bridging the division…
High resolution peripheral quantitative computed tomography (HR-pQCT) is an imaging technique capable of imaging trabecular bone in-vivo. HR-pQCT has a wide range of applications, primarily focused on bone to improve our understanding of…
Characterization of breast parenchyma on dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) is a challenging task owing to the complexity of underlying tissue structures. Current quantitative approaches, including radiomics and…
We introduce Med-CTX, a fully transformer based multimodal framework for explainable breast cancer ultrasound segmentation. We integrate clinical radiology reports to boost both performance and interpretability. Med-CTX achieves exact…
In the last decade, developments in tropical geometry have provided a number of uses directly applicable to problems in statistical learning. The TML package is the first R package which contains a comprehensive set of tools and methods…
Large language models (LLMs) are increasingly touted as powerful tools for automating scientific information extraction. However, existing methods and tools often struggle with the realities of scientific literature: long-context documents,…
We present TORAX, a new, open-source, differentiable tokamak core transport simulator implemented in Python using the JAX framework. TORAX solves the coupled equations for ion heat transport, electron heat transport, particle transport, and…
Accurate identification, localization, and segregation of teeth from Cone Beam Computed Tomography (CBCT) images are essential for analyzing dental pathologies. Modeling an individual tooth can be challenging and intricate to accomplish,…
We present a Python toolbox for holographic and tomographic X-ray imaging. It comprises a collection of phase retrieval algorithms for the deeply holographic and direct contrast imaging regimes, including non-linear approaches and extended…
Immunohistochemistry (IHC) is essential in diagnostic pathology and biomedical research, offering critical insights into protein expression and tumour biology. This study presents an automated pipeline, IHC-LLMiner, for extracting…
We introduce TopoX, a Python software suite that provides reliable and user-friendly building blocks for computing and machine learning on topological domains that extend graphs: hypergraphs, simplicial, cellular, path and combinatorial…
A significant portion of the data available today is found within tables. Therefore, it is necessary to use automated table extraction to obtain thorough results when data-mining. Today's popular state-of-the-art methods for table…
Automatic extraction of retinal vascular biomarkers from color fundus images (CFI) is crucial for large-scale studies of the retinal vasculature. We present VascX, an open-source Python toolbox that extracts biomarkers from CFI artery-vein…
This note is a short description of TeCoMiner, an interactive tool for exploring the topic content of text collections. Unlike other topic modeling tools, TeCoMiner is not based on some generative probabilistic model but on topological…
Circulating tumor cells (CTCs) are cancer cells found in the bloodstream that serve as biomarkers for early cancer detection, prognostication, and disease monitoring. However, CTC detection remains challenging due to low cell abundance and…
Endometriosis ultrasound reports are often unstructured free-text documents that require manual abstraction for downstream tasks such as analytics, machine learning model training, and clinical auditing. We present \textbf{EndoExtract}, an…
Hierarchical text classification (HTC) is a natural language processing task which has the objective of categorising text documents into a set of classes from a predefined structured class hierarchy. Recent HTC approaches use various…
The TraX Engine is an advanced data processing tool developed by ADVACAM in collaboration with the European Space Agency (ESA), specifically designed for analyzing data from Timepix detectors equipped with various sensor materials (Si,…
The complex ac impedance of a bolometer or microcalorimeter detector is easily measured and can be used to determine thermal time constants, thermal resistances, heat capacities, and sensitivities. Accurately extracting this information…