Related papers: A semi-bijective algorithm for saturated extended …
An algorithmic computation of the set of unpointed stable homotopy classes of equivariant fibrewise maps was described in a recent paper of the author and his collaborators. In the present paper, we describe a simplification of this…
Enumerative studies of RNA secondary structures were initiated four decades ago by Waterman and his coworkers. Since then, RNA secondary structures have been explored according to many different structural characteristics, for instance,…
Recently, we presented a new Two-Bar Charts Packing Problem (2-BCPP), in which it is necessary to pack two-bar charts (2-BCs) in a unit-height strip of minimum length. The problem is a generalization of the Bin Packing Problem and 2-D…
We study the structure of the set of all possible affine hyperplane sections of a convex polytope. We present two different cell decompositions of this set, induced by hyperplane arrangements. Using our decomposition, we bound the number of…
Link-based data structures, such as linked lists and binary search trees, have many well-known rearrangement steps allowing for efficient implementations of insertion, deletion, and other operations. We describe a rearrangement primitive…
We study the problem of enumerating Tarski fixed points on finite lattices. We derive query complexity lower bounds for finding three or more Tarski fixed points of isotone maps and the subclasses of increasing and decreasing isotone maps.…
Prediction of protein secondary structure from the amino acid sequence is a classical bioinformatics problem. Common methods use feed forward neural networks or SVMs combined with a sliding window, as these models does not naturally handle…
The combinatorics of RNA plays a central role in biology. Mathematical biologists have several commonly-used models for RNA: words in a fixed alphabet (representing the primary sequence of nucleotides) and plane trees (representing the…
Motivated by the study of genome rearrangements, the NP-hard Minimum Common String Partition problems asks, given two strings, to split both strings into an identical set of blocks. We consider an extension of this problem to unbalanced…
This paper addresses two questions: (a) can we identify a sensible class of 2-parameter persistence modules on which the rank invariant is complete? (b) can we determine efficiently whether a given 2-parameter persistence module belongs to…
Randomized algorithms provide solutions to two ubiquitous problems: (1) the distributed calculation of a principal component analysis or singular value decomposition of a highly rectangular matrix, and (2) the distributed calculation of a…
We describe a straightforward construction of the pseudo-split absolutely pseudo-simple groups of minimal type with irreducible root systems of type $BC_n$; these exist only in characteristic $2$. We also give a formula for the dimensions…
A bilevel program is an optimization problem whose constraints involve another optimization problem. This paper studies bilevel polynomial programs (BPPs), i.e., all the functions are polynomials. We reformulate BPPs equivalently as…
Encoding the electronic structure of molecules using 2-electron reduced density matrices (2RDMs) as opposed to many-body wave functions has been a decades-long quest as the 2RDM contains sufficient information to compute the exact molecular…
In phylogenetics, a central problem is to infer the evolutionary relationships between a set of species $X$; these relationships are often depicted via a phylogenetic tree -- a tree having its leaves univocally labeled by elements of $X$…
By Foissy's work, the bidendriform structure of the Word Quasisymmetric Functions Hopf algebra (WQSym) implies that it is isomorphic to its dual. However, the only known explicit isomorphism does not respect the bidendriform structure. This…
Spatial numerical integration is essential for finite element analysis. Currently, numerical integration schemes, mostly based on Gauss quadrature, are widely used. Herein, we present an alternative semi-analytical approach for mass matrix…
Patience Sorting is a combinatorial algorithm that can be viewed as an iterated, non-recursive form of the Schensted Insertion Algorithm. In recent work the authors extended Patience Sorting to a full bijection between the symmetric group…
Motivated by applications to low-rank matrix completion, we give a combinatorial characterization of the independent sets in the algebraic matroid associated to the collection of $m\times n$ rank-2 matrices and $n\times n$ skew-symmetric…
For a Coxeter element $c$ of a finite Coxeter group, we consider a family of subword complexes parameterized by reduced expressions of the longest element. This family generalizes $c-$cluster complexes. We describe vertices of these…