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Hypergraphs are a powerful abstraction for representing higher-order interactions between entities of interest. To exploit these relationships in making downstream predictions, a variety of hypergraph neural network architectures have…

Machine Learning · Computer Science 2023-06-21 Yuxin Wang , Quan Gan , Xipeng Qiu , Xuanjing Huang , David Wipf

Understanding transport processes in complex nanoscale systems, like ionic conductivities in nanofluidic devices or heat conduction in low dimensional solids, poses the problem of examining fluctuations of currents within nonequilibrium…

Mesoscale and Nanoscale Physics · Physics 2021-08-04 David T. Limmer , Chloe Y. Gao , Anthony R. Poggioli

Control of complex processes is a major goal of network analyses. Most approaches to control nonlinearly coupled systems require the network topology and/or network dynamics. Unfortunately, neither the full set of participating nodes nor…

Molecular Networks · Quantitative Biology 2014-12-23 Jason Shulman , Frank Malatino , Alexander Mo , Killian Ryan , Gemunu H. Gunaratne

An information theoretic approach inspired by quantum statistical mechanics was recently proposed as a means to optimize network models and to assess their likelihood against synthetic and real-world networks. Importantly, this method does…

Statistical Mechanics · Physics 2018-09-12 Carlo Nicolini , Vladimir Vlasov , Angelo Bifone

The conversion of $\mathrm{CO_2}$ into useful products such as methanol is a key strategy for abating climate change and our dependence on fossil fuels. Developing new catalysts for this process is costly and time-consuming and can thus…

Materials Science · Physics 2025-10-20 Luuk H. E. Kempen , Marius Juul Nielsen , Mie Andersen

Simulating transition dynamics between metastable states is a fundamental challenge in dynamical systems and stochastic processes with wide real-world applications in understanding protein folding, chemical reactions and neural activities.…

Machine Learning · Computer Science 2024-10-22 Haibo Wang , Yuxuan Qiu , Yanze Wang , Rob Brekelmans , Yuanqi Du

With the rapid development of artificial intelligence in recent years, mankind is facing an unprecedented demand for data processing. Today, almost all data processing is performed using electrons in conventional complementary…

Applied Physics · Physics 2023-11-13 Qi Wang , Gyorgy Csaba , Roman Verba , Andrii V. Chumak , Philipp Pirro

The calculation of time-dependent charge and energy currents in nanoscale systems is a challenging task. Nevertheless it is crucial for gaining a deep understanding of the relevant processes at the nanoscale. We extend the auxiliary-mode…

Mesoscale and Nanoscale Physics · Physics 2018-11-14 Thomas Lehmann , Alexander Croy , Rafael Gutiérrez , Gianaurelio Cuniberti

We analyze an electronic nanoscale thermal machine driven by time-dependent environment: besides bias and gate voltage variations, we consider also the less prevailing time modulation of the couplings between leads and dot. We provide…

Mesoscale and Nanoscale Physics · Physics 2016-01-18 A. -M. Daré , P. Lombardo

Complex networks have acquired a great popularity in recent years, since the graph representation of many natural, social and technological systems is often very helpful to characterize and model their phenomenology. Additionally, the…

Physics and Society · Physics 2009-02-06 Filippo Radicchi , Alain Barrat , Santo Fortunato , Jose J. Ramasco

Machine learning methods, in particular deep learning methods such as artificial neural networks (ANNs) with many layers, have become widespread and useful tools in nuclear physics. However, these ANNs are typically treated as ``black…

Nuclear Theory · Physics 2025-08-05 S. A. Sundberg , R. J. Furnstahl

A model hierarchy that is based on the one-dimensional isothermal Euler equations of fluid dynamics is used for the simulation and optimisation of gas flow through a pipeline network. Adaptive refinement strategies have the aim of bringing…

Numerical Analysis · Mathematics 2017-02-01 Pia Domschke , Aseem Dua , Jeroen J. Stolwijk , Jens Lang , Volker Mehrmann

Energy filter methods in combination with quantum simulation can efficiently access the properties of quantum many-body systems at finite energy densities [Lu et al. PRX Quantum 2, 020321 (2021)]. Classically simulating this algorithm with…

Quantum Physics · Physics 2024-07-08 Maxine Luo , Rahul Trivedi , Mari Carmen Bañuls , J. Ignacio Cirac

Generalized mutual entropy is defined for networks and applied for analysis of complex network structures. The method is tested for the case of computer simulated scale free networks, random networks, and their mixtures. The possible…

Disordered Systems and Neural Networks · Physics 2009-11-13 V. Gudkov , V. Montealegre

A dynamical system obtains a wide variety of kinetic realizations, which is advantageous for the analysis of biochemical systems. A reaction network, derived from a dynamical system, may or may not possess some properties needed for a…

Molecular Networks · Quantitative Biology 2024-05-01 Dylan Antonio Talabis , Eduardo Mendoza

Decomposition of biomolecular reaction networks into pathways is a powerful approach to the analysis of metabolic and signalling networks. Current approaches based on analysis of the stoichiometric matrix reveal information about…

Molecular Networks · Quantitative Biology 2018-08-14 Peter J. Gawthrop , Edmund J. Crampin

This paper proposes a tractable framework to determine key characteristics of non-linear dynamic systems by converting physics-informed neural networks to a mixed integer linear program. Our focus is on power system applications.…

Systems and Control · Electrical Eng. & Systems 2021-04-01 Georgios S. Misyris , Jochen Stiasny , Spyros Chatzivasileiadis

Thermodynamics at the nanoscale is known to differ significantly from its familiar macroscopic counterpart: the possibility of state transitions is not determined by free energy alone, but by an infinite family of free-energy-like…

Quantum Physics · Physics 2018-12-21 Markus P. Mueller

Molecule- and solid-state gears build the elementary constituents of nanoscale mechanical machineries. Recent experimental advances in fabrication technologies in the field have strongly contributed to better delineate the roadmap towards…

Mesoscale and Nanoscale Physics · Physics 2022-05-10 Huang-Hsiang Lin , Alexander Croy , Rafael Gutierrez , Gianaurelio Cuniberti

This paper deals with neural networks modelling of HVAC systems. In order to increase the neural networks performances, a method based on sensitivity analysis is applied. The same technique is also used to compute the relevance of each…

Neural and Evolutionary Computing · Computer Science 2012-12-27 Eric Fock , Thierry Alex Mara , Alfred Jean Philippe Lauret , Harry Boyer