Related papers: The Universal $\ell^p$-Metric on Merge Trees
Motivated both by theoretical and practical considerations in topological data analysis, we generalize the $p$-Wasserstein distance on barcodes to multiparameter persistence modules. For each $p\in [1,\infty]$, we in fact introduce two such…
In this paper we define a novel edit distance for merge trees, which we argue to be suitable for a good range of applications. Relying also on some technical results contained in other works, we investigate its stability properties, which…
Merge trees are a topological descriptor of a filtered space that enriches the degree zero barcode with its merge structure. The space of merge trees comes equipped with an interleaving distance $d_I$, which prompts a naive question: is the…
Recently, $p$-presentation distances for $p\in [1,\infty]$ were introduced for merge trees and multiparameter persistence modules as more sensitive variations of the respective interleaving distances ($p=\infty)$. It is well-known that…
This paper presents a unified computational framework for the estimation of distances, geodesics and barycenters of merge trees. We extend recent work on the edit distance [106] and introduce a new metric, called the Wasserstein distance…
Merge trees are fundamental structures in topological data analysis. Interleaving distance is a widely accepted metric for comparing merge trees, with applications in visualization and scientific computing. While a greedy algorithm exists…
Merge trees are a type of graph-based topological summary that tracks the evolution of connected components in the sublevel sets of scalar functions. They enjoy widespread applications in data analysis and scientific visualization. In this…
Barcodes form a complete set of invariants for interval decomposable persistence modules and are an important summary in topological data analysis. The set of barcodes is equipped with a canonical one-parameter family of metrics, the…
There are many metrics available to compare phylogenetic trees since this is a fundamental task in computational biology. In this paper, we focus on one such metric, the $\ell^\infty$-cophenetic metric introduced by Cardona et al. This…
We study the problem of how well a tree metric is able to preserve the sum of pairwise distances of an arbitrary metric. This problem is closely related to low-stretch metric embeddings and is interesting by its own flavor from the line of…
In this work we study the interleaving distance between merge trees from a combinatorial point of view. We use a particular type of matching between trees to obtain a novel formulation of the distance. With such formulation, we tackle the…
Distances on merge trees facilitate visual comparison of collections of scalar fields. Two desirable properties for these distances to exhibit are 1) the ability to discern between scalar fields which other, less complex topological…
We prove that persistence diagrams with the p-Wasserstein distance form the universal p-subadditive commutative monoid on an underlying metric space with a distinguished subset. This result applies to persistence diagrams, barcodes, and to…
Metrics for merge trees that are simultaneously stable, informative, and efficiently computable have so far eluded researchers. We show in this work that it is possible to devise such a metric when restricting merge trees to ordered domains…
This paper presents a generalization of the Wasserstein distance for both persistence diagrams and merge trees [20], [66] that takes advantage of the regions of their topological features in the input domain. Specifically, we redefine the…
The Isometry Theorem of Chazal et al. and Lesnick is a fundamental result in persistence theory, which states that the interleaving distance between two one-parameter persistence modules is equal to the bottleneck distance between their…
We establish tight bi-Lipschitz bounds certifying quasi-universality (universality up to a constant factor) for various distances between Reeb graphs: the interleaving distance, the functional distortion distance, and the functional…
We study the Wasserstein (or earthmover) metric on the space $P(X)$ of probability measures on a metric space $X$. We show that, if a finite metric space $X$ embeds stochastically with distortion $D$ in a family of finite metric trees, then…
The extended persistence diagram is an invariant of piecewise linear functions, which is known to be stable under perturbations of functions with respect to the bottleneck distance as introduced by Cohen-Steiner, Edelsbrunner, and Harer. We…
Geometric graphs appear in many real-world data sets, such as road networks, sensor networks, and molecules. We investigate the notion of distance between embedded graphs and present a metric to measure the distance between two geometric…