Related papers: Optimal Gap Sequences in Shellsort for $n\leq16$ E…
Shellsort is a sorting method that is attractive due to its simplicity, yet it takes effort to analyze its efficiency. The heart of the algorithm is the gap sequence chosen a priori and used during sorting. The selection of this gap…
Experiments are conducted to improve Tokuda (1992) gap sequence in Shellsort into $\gamma$-sequences, and the best result is the gap sequence in which the $k$-th increment $h_k$ is given by \begin{align} h_k=\left\lceil…
In preference modelling, it is essential to determine the number of questions and their arrangements to ask from the decision maker. We focus on incomplete pairwise comparison matrices, and provide the optimal filling in patterns, which…
The paper addresses the problem of defining families of ordered sequences $\{x_i\}_{i\in N}$ of elements of a compact subset $X$ of $R^d$ whose prefixes $X_n=\{x_i\}_{i=1}^{n}$, for all orders $n$, have good space-filling properties as…
Common intervals have been defined as a modelisation of gene clusters in genomes represented either as permutations or as sequences. Whereas optimal algorithms for finding common intervals in permutations exist even for an arbitrary number…
We consider the problem of sequencing a set of positive numbers. We try to find the optimal sequence to maximize the variance of its partial sums. The optimal sequence is shown to have a beautiful structure. It is interesting to note that…
Following recent work by Koll\'{a}r and Sarnak, we study gaps in the spectra of large connected cubic and quartic graphs with minimum spectral gap. We focus on two sequences of graphs, denoted $\Delta_n$ and $\Gamma_n$ which are more…
Identifying palindromes in sequences has been an interesting line of research in combinatorics on words and also in computational biology, after the discovery of the relation of palindromes in the DNA sequence with the HIV virus. Efficient…
In this note, we extend the notion of minimal gaps to the higher dimensional sequences. We bound the minimal gap for $(\{\boldsymbol{a}_n\boldsymbol{\alpha}\}),$ $(\{a_n\boldsymbol{\alpha}\})$ and…
An $(n,k)$ sequence covering array is a set of permutations of $[n]$ such that each sequence of $k$ distinct elements of $[n]$ is a subsequence of at least one of the permutations. An $(n,k)$ sequence covering array is perfect if there is a…
In parametric sequence alignment, optimal alignments of two sequences are computed as a function of the penalties for mismatches and spaces, producing many different optimal alignments. Here we give a 3/(2^{7/3}\pi^{2/3})n^{2/3} +O(n^{1/3}…
It is a long-standing open question to determine the minimum number of comparisons $S(n)$ that suffice to sort an array of $n$ elements. Indeed, before this work $S(n)$ has been known only for $n\leq 22$ with the exception for $n=16$, $17$,…
One of the fundamental problem in the theory of sorting is to find the pessimistic number of comparisons sufficient to sort a given number of elements. Currently 16 is the lowest number of elements for which we do not know the exact value.…
A sequence $(x_n)$ on the torus is said to have Poissonian pair correlations if $\# \{1\le i\neq j\le N: |x_i-x_j| \le s/N\}=2sN(1+o(1))$ for all reals $s>0$, as $N\to \infty$. It is known that, if $(x_n)$ has Poissonian pair correlations,…
We study the space requirements of a sorting algorithm where only items that at the end will be adjacent are kept together. This is equivalent to the following combinatorial problem: Consider a string of fixed length n that starts as a…
Let $q>r\ge1$ be coprime integers. Let ${\mathbb P}_c={\mathbb P}_c(q,r,{\cal H})$ be an increasing sequence of primes $p$ satisfying two conditions: (i) $p\equiv r$ (mod $q$) and (ii) $p$ starts a prime $k$-tuple with a given pattern…
Assuming the Riemann hypothesis, this article discusses a new elementary argument that seems to prove that the maximal prime gap of a finite sequence of primes p_1, p_2, ..., p_n <= x, satisfies max {p_(n+1) - p_n : p_n <= x} <=…
We consider the problem of sorting $n$ elements in the case of \emph{persistent} comparison errors. In this model (Braverman and Mossel, SODA'08), each comparison between two elements can be wrong with some fixed (small) probability $p$,…
The structure of all the permutations of a sequence can be represented as a permutohedron, a graph where vertices are permutations and two vertices are linked if a swap of adjacent elements in the permutation of one of the vertices produces…
The statistical properties of local alignment algorithms with gaps are analyzed theoretically for uncorrelated and correlated DNA sequences. In the vicinity of the log-linear phase transition, the statistics of alignment with gaps is shown…