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We propose a family of very efficient hierarchical indexing schemes for ungapped, score matrix-based similarity search in large datasets of short (4-12 amino acid) protein fragments. This type of similarity search has importance in both…

Data Structures and Algorithms · Computer Science 2007-09-04 Aleksandar Stojmirovic , Vladimir Pestov

Processing graphs with temporal information (the temporal graphs) has become increasingly important in the real world. In this paper, we study efficient solutions to temporal graph applications using new algorithms for Incremental Minimum…

Data Structures and Algorithms · Computer Science 2025-05-13 Xiangyun Ding , Yan Gu , Yihan Sun

We present an empirical analysis of data structures for approximate nearest neighbor searching. We compare the well-known optimized kd-tree splitting method against two alternative splitting methods. The first, called the sliding-midpoint…

Computational Geometry · Computer Science 2007-05-23 Songrit Maneewongvatana , David M. Mount

Monte Carlo Tree Search (MCTS) is a powerful algorithm for solving complex decision-making problems. This paper presents an optimized MCTS implementation applied to the FrozenLake environment, a classic reinforcement learning task…

Artificial Intelligence · Computer Science 2024-09-26 Esteban Aldana Guerra

In this article we propose a heuristic algorithm to explore search space trees associated with instances of combinatorial optimization problems. The algorithm is based on Monte Carlo tree search, a popular algorithm in game playing that is…

Artificial Intelligence · Computer Science 2022-11-17 Jorik Jooken , Pieter Leyman , Tony Wauters , Patrick De Causmaecker

Similarity search is a fundamental problem for many data analysis techniques. Many efficient search techniques rely on the triangle inequality of metrics, which allows pruning parts of the search space based on transitive bounds on…

Machine Learning · Computer Science 2021-11-02 Erich Schubert

We study the number of distance queries needed to identify certain properties of a hidden tree $T$ on $n$ vertices. A distance query consists of two vertices $x,y$, and the answer is the distance of $x$ and $y$ in $T$. We determine the…

Data Structures and Algorithms · Computer Science 2025-09-30 Dániel Gerbner , András Imolay , Kartal Nagy , Balázs Patkós , Kristóf Zólomy

We introduce a new metric of match, called Cartesian tree matching, which means that two strings match if they have the same Cartesian trees. Based on Cartesian tree matching, we define single pattern matching for a text of length n and a…

Data Structures and Algorithms · Computer Science 2019-05-23 Sung Gwan Park , Amihood Amir , Gad M. Landau , Kunsoo Park

Distance-based clustering and classification are widely used in various fields to group mixed numeric and categorical data. In many algorithms, a predefined distance measurement is used to cluster data points based on their dissimilarity.…

Machine Learning · Computer Science 2024-10-14 Jesse S. Ghashti , John R. J. Thompson

To overcome range anxiety problem of Electric Vehicles (EVs), an accurate real-time energy consumption estimation is necessary, which can be used to provide the EV's driver with information about the remaining range in real-time. A hybrid…

Signal Processing · Electrical Eng. & Systems 2021-04-22 Shatrughan Modi , Jhilik Bhattacharya , Prasenjit Basak

We present a polynomial time dynamic programming algorithm for optimal partitions in the shortest path metric induced by a tree. This resolves, among other things, the exact complexity status of the optimal partition problems in one…

Data Structures and Algorithms · Computer Science 2012-12-17 Marek Karpinski , Andrzej Lingas , Dzmitry Sledneu

Decision tree learning is a widely used approach in machine learning, favoured in applications that require concise and interpretable models. Heuristic methods are traditionally used to quickly produce models with reasonably high accuracy.…

Similarity search is the problem of finding in a collection of objects those that are similar to a given query object. It is a fundamental problem in modern applications and the objects considered may be as diverse as locations in space,…

Databases · Computer Science 2024-08-15 Ralf Hartmut Güting , Suvam Kumar Das , Fabio Valdés , Suprio Ray

In this paper we offer a new perspective on the well established agglomerative clustering algorithm, focusing on recovery of hierarchical structure. We recommend a simple variant of the standard algorithm, in which clusters are merged by…

Machine Learning · Statistics 2024-03-04 Annie Gray , Alexander Modell , Patrick Rubin-Delanchy , Nick Whiteley

The k-d tree is a classic binary space-partitioning tree used to organize points in k-dimensional space. While used in computational geometry and graphics, the data structure has a long history of application in nearest neighbor search. The…

Logic in Computer Science · Computer Science 2023-11-21 Nadeem Abdul Hamid

Answering complex logical queries on incomplete knowledge graphs is a challenging task, and has been widely studied. Embedding-based methods require training on complex queries, and cannot generalize well to out-of-distribution query…

Machine Learning · Computer Science 2023-06-08 Yushi Bai , Xin Lv , Juanzi Li , Lei Hou

Numerous analysis methods for quantitative attack tree analysis have been proposed. These algorithms compute relevant security metrics, i.e. performance indicators that quantify how good the security of a system is, such as the most likely…

Cryptography and Security · Computer Science 2022-09-29 Carlos E. Budde , Mariëlle Stoelinga

Recent years have witnessed a surge of biological interest in the minimum spanning tree (MST) problem for its relevance to automatic model construction using the distances between data points. Despite the increasing use of MST algorithms…

Quantitative Methods · Quantitative Biology 2015-11-02 Momoko Hayamizu , Hiroshi Endo , Kenji Fukumizu

Multi-objective embedding-based retrieval (EBR) has become increasingly critical due to the growing complexity of user behaviors and commercial objectives. While traditional approaches often suffer from data sparsity and limited information…

Information Retrieval · Computer Science 2025-04-18 Hao Deng , Haibo Xing , Kanefumi Matsuyama , Moyu Zhang , Jinxin Hu , Hong Wen , Yu Zhang , Xiaoyi Zeng , Jing Zhang

This paper proposes a new mechanism for pruning a search game-tree in computer chess. The algorithm stores and then reuses chains or sequences of moves, built up from previous searches. These move sequences have a built-in forward-pruning…

Artificial Intelligence · Computer Science 2014-03-05 Kieran Greer
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