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Graph-based patterns are extensively employed and favored by practitioners within industrial companies due to their capacity to represent the behavioral attributes and topological relationships among users, thereby offering enhanced…

Machine Learning · Computer Science 2024-11-12 Sheng Tian , Xintan Zeng , Yifei Hu , Baokun Wang , Yongchao Liu , Yue Jin , Changhua Meng , Chuntao Hong , Tianyi Zhang , Weiqiang Wang

Similarity search is one of the most fundamental computations that are regularly performed on ever-increasing protein datasets. Scalability is of paramount importance for uncovering novel phenomena that occur at very large scales. We…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-03-06 Oguz Selvitopi , Saliya Ekanayake , Giulia Guidi , Muaaz G. Awan , Georgios A. Pavlopoulos , Ariful Azad , Nikos Kyrpides , Leonid Oliker , Katherine Yelick , Aydın Buluç

The ability to model, analyze, and predict execution time of computations is an important building block supporting numerous efforts, such as load balancing, performance optimization, and automated performance tuning for high performance,…

Performance · Computer Science 2020-06-22 James D. Stevens , Andreas Klöckner

GPUs have significantly accelerated first-order methods for large-scale optimization, especially in continuous optimization. However, this success has not transferred cleanly to problems with discrete variables, combinatorial structure, and…

Machine Learning · Computer Science 2026-05-22 Jiachang Liu , Andrea Lodi

Identifying frequent subgraphs, also called network motifs, is crucial in analyzing and predicting properties of real-world networks. However, finding large commonly-occurring motifs remains a challenging problem not only due to its NP-hard…

Machine Learning · Computer Science 2024-02-23 Rex Ying , Tianyu Fu , Andrew Wang , Jiaxuan You , Yu Wang , Jure Leskovec

We present our work on developing and training scalable, trustworthy, and energy-efficient predictive graph foundation models (GFMs) using HydraGNN, a multi-headed graph convolutional neural network architecture. HydraGNN expands the…

The Kernel Polynomial Method (KPM) is one of the fast diagonalization methods used for simulations of quantum systems in research fields of condensed matter physics and chemistry. The algorithm has a difficulty to be parallelized on a…

Computational Physics · Physics 2011-05-30 Shixun Zhang , Shinichi Yamagiwa , Masahiko Okumura , Seiji Yunoki

Graph neural networks (GNNs) are widely used for learning on graph datasets derived from various real-world scenarios. Learning from extremely large graphs requires distributed training, and mini-batching with sampling is a popular approach…

Full batch training of Graph Convolutional Network (GCN) models is not feasible on a single GPU for large graphs containing tens of millions of vertices or more. Recent work has shown that, for the graphs used in the machine learning…

Machine Learning · Computer Science 2021-10-19 Muhammed Fatih Balın , Kaan Sancak , Ümit V. Çatalyürek

The rapid evolution of programming languages and software systems has necessitated the implementation of multilingual and scalable clone detection tools. However, it is difficult to achieve the above requirements at the same time. Most…

Software Engineering · Computer Science 2024-12-06 Yuhang Ye , Yuekun Wang , Yinxing Xue , Yueming Wu , Yang Liu

Graphics Processing Units (GPUs) have become an integral part of High-Performance Computing to achieve an Exascale performance. The main goal of application developers of GPU is to tune their code extensively to obtain optimal performance,…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-05-04 Gargi Alavani , Santonu Sarkar

While it is well-known and acknowledged that the performance of graph algorithms is heavily dependent on the input data, there has been surprisingly little research to quantify and predict the impact the graph structure has on performance.…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-08-04 Merijn Verstraaten , Ana Lucia Varbanescu , Cees de Laat

Frequent-pattern mining is a common approach to reveal the valuable hidden trends behind data. However, existing frequent-pattern mining algorithms are designed for DRAM, instead of persistent memories (PMs), which can lead to severe…

Databases · Computer Science 2020-08-26 Jiaqi Dong , Runyu Zhang , Chaoshu Yang , Yujuan Tan , Duo Liu

GPUs offer massive compute parallelism and high-bandwidth memory accesses. GPU database systems seek to exploit those capabilities to accelerate data analytics. Although modern GPUs have more resources (e.g., higher DRAM bandwidth) than…

Databases · Computer Science 2023-02-03 Jiashen Cao , Rathijit Sen , Matteo Interlandi , Joy Arulraj , Hyesoon Kim

Graph neural networks (GNNs), an emerging class of machine learning models for graphs, have gained popularity for their superior performance in various graph analytical tasks. Mini-batch training is commonly used to train GNNs on large…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-15 Sandeep Polisetty , Juelin Liu , Kobi Falus , Yi Ren Fung , Seung-Hwan Lim , Hui Guan , Marco Serafini

Graph convolutional neural networks (GCNs) have achieved state-of-the-art performance on graph-structured data analysis. Like traditional neural networks, training and inference of GCNs are accelerated with GPUs. Therefore, characterizing…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-01-29 Mingyu Yan , Zhaodong Chen , Lei Deng , Xiaochun Ye , Zhimin Zhang , Dongrui Fan , Yuan Xie

Process mapping asks to assign vertices of a task graph to processing elements of a supercomputer such that the computational workload is balanced while the communication cost is minimized. Motivated by the recent success of GPU-based graph…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-03-16 Petr Samoldekin , Christian Schulz , Henning Woydt

General Matrix Multiplication (GEMM) is a crucial algorithm for various applications such as machine learning and scientific computing, and an efficient GEMM implementation is essential for the performance of these systems. While…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-05-03 Shixun Wu , Yujia Zhai , Jinyang Liu , Jiajun Huang , Zizhe Jian , Bryan M. Wong , Zizhong Chen

Graph Neural Networks (GNNs) are emerging ML models to analyze graph-structure data. Graph Neural Network (GNN) execution involves both compute-intensive and memory-intensive kernels, the latter dominates the total time, being significantly…

Scientific workloads have traditionally exploited high levels of sparsity to accelerate computation and reduce memory requirements. While deep neural networks can be made sparse, achieving practical speedups on GPUs is difficult because…

Machine Learning · Computer Science 2020-09-02 Trevor Gale , Matei Zaharia , Cliff Young , Erich Elsen
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