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Single particle imaging (SPI) is a promising method for native structure determination which has undergone a fast progress with the development of X-ray Free-Electron Lasers. Large amounts of data are collected during SPI experiments,…

Image and Video Processing · Electrical Eng. & Systems 2021-04-23 Alexandr Ignatenko , Dameli Assalauova , Sergey A. Bobkov , Luca Gelisio , Anton B. Teslyuk , Viacheslav A. Ilyin , Ivan A. Vartanyants

The development of X-ray Free Electron Lasers (XFELs) has opened numerous opportunities to probe atomic structure and ultrafast dynamics of various materials. Single Particle Imaging (SPI) with XFELs enables the investigation of biological…

Computer Vision and Pattern Recognition · Computer Science 2023-11-29 Zhantao Chen , Cong Wang , Mingye Gao , Chun Hong Yoon , Jana B. Thayer , Joshua J. Turner

Single particle imaging (SPI) at X-ray free electron lasers (XFELs) is a technique to determine the 3D structure of nanoscale objects like biomolecules from a large number of diffraction patterns of copies of these objects in random…

Image and Video Processing · Electrical Eng. & Systems 2022-10-20 Abhishek Mall , Kartik Ayyer

We present a novel adaptive machine-learning based approach for reconstructing three-dimensional (3D) crystals from coherent diffraction imaging (CDI). We represent the crystals using spherical harmonics (SH) and generate corresponding…

Computational Physics · Physics 2020-12-02 Alexander Scheinker , Reeju Pokharel

X-ray free-electron lasers (XFELs) offer unique capabilities for measuring the structure and dynamics of biomolecules, helping us understand the basic building blocks of life. Notably, high-repetition-rate XFELs enable single particle…

Computer Vision and Pattern Recognition · Computer Science 2023-12-25 Jay Shenoy , Axel Levy , Frédéric Poitevin , Gordon Wetzstein

With X-ray free-electron lasers (XFELs), it is possible to determine the three-dimensional structure of noncrystalline nanoscale particles using X-ray single-particle imaging (SPI) techniques at room temperature. Classifying SPI scattering…

Machine Learning · Computer Science 2023-02-15 Cong Wang , Eric Florin , Hsing-Yin Chang , Jana Thayer , Chun Hong Yoon

Coherent diffraction imaging enables the imaging of individual defects, such as dislocations or stacking faults, in materials.These defects and their surrounding elastic strain fields have a critical influence on the macroscopic properties…

We propose a convolutional neural network (CNN) architecture for image classification based on subband decomposition of the image using wavelets. The proposed architecture decomposes the input image spectra into multiple critically sampled…

Computer Vision and Pattern Recognition · Computer Science 2021-03-03 Pavel Sinha , Ioannis Psaromiligkos , Zeljko Zilic

Single-shot wide-angle diffraction imaging is a widely used method to investigate the structure of non-crystallizing objects such as nanoclusters, large proteins or even viruses. Its main advantage is that information about the…

Data Analysis, Statistics and Probability · Physics 2021-06-02 Thomas Stielow , Stefan Scheel

Convolutional neural networks (CNNs) are widely used for image recognition and text analysis, and have been suggested for application on one-dimensional data as a way to reduce the need for pre-processing steps. Pre-processing is an…

Machine Learning · Computer Science 2020-05-18 Ine L. Jernelv , Dag Roar Hjelme , Yuji Matsuura , Astrid Aksnes

Capturing feature information effectively is of great importance in the field of computer vision. With the development of convolutional neural networks (CNNs), concepts like residual connection and multiple scales promote continual…

Computer Vision and Pattern Recognition · Computer Science 2024-12-30 Yuanpeng He , Wenjie Song , Lijian Li , Tianxiang Zhan , Wenpin Jiao

Single-particle trajectories measured in microscopy experiments contain important information about dynamic processes undergoing in a range of materials including living cells and tissues. However, extracting that information is not a…

Quantitative Methods · Quantitative Biology 2019-09-25 Patrycja Kowalek , Hanna Loch-Olszewska , Janusz Szwabiński

In Bragg Coherent Diffraction Imaging (BCDI), Phase Retrieval of highly strained crystals is often challenging with standard iterative algorithms. This computational obstacle limits the potential of the technique as it precludes the…

Large volumes of data from material characterizations call for rapid and automatic data analysis to accelerate materials discovery. Herein, we report a convolutional neural network (CNN) that was trained based on theoretic data and very…

Data Analysis, Statistics and Probability · Physics 2019-12-18 Hong Wang , Yunchao Xie , Dawei Li , Heng Deng , Yunxin Zhao , Ming Xin , Jian Lin

Convolutional Neural Networks (CNNs) have demonstrated great results for the single-image super-resolution (SISR) problem. Currently, most CNN algorithms promote deep and computationally expensive models to solve SISR. However, we propose a…

Computer Vision and Pattern Recognition · Computer Science 2018-08-28 Vandit Jain , Prakhar Bansal , Abhinav Kumar Singh , Rajeev Srivastava

Single particle diffraction imaging experiments at free-electron lasers (FEL) have a great potential for structure determination of reproducible biological specimens that can not be crystallized. One of the challenges in processing the data…

Biological Physics · Physics 2013-10-16 O. M. Yefanov , I. A. Vartanyants

The success of Convolutional Neural Networks (CNNs) in image classification has prompted efforts to study their use for classifying image data obtained in Particle Physics experiments. Here, we discuss our efforts to apply CNNs to 2D and 3D…

High Energy Physics - Experiment · Physics 2020-12-08 Venkitesh Ayyar , Wahid Bhimji , Lisa Gerhardt , Sally Robertson , Zahra Ronaghi

Over the past decade, convolutional neural networks (CNNs) have become the driving force of an ever-increasing set of applications, achieving state-of-the-art performance. Most of the modern CNN architectures are composed of many…

Machine Learning · Computer Science 2020-09-15 Alicia Montserrat Alvarado-Gonzalez , Gibran Fuentes-Pineda , Jorge Cervantes-Ojeda

Single-pixel imaging (SPI) is a novel imaging technique whose working principle is based on the compressive sensing (CS) theory. In SPI, data is obtained through a series of compressive measurements and the corresponding image is…

Image and Video Processing · Electrical Eng. & Systems 2022-07-15 Stephen L. H. Lau , Edwin K. P. Chong

Intense short-wavelength pulses from free-electron lasers and high-harmonic-generation sources enable diffractive imaging of individual nano-sized objects with a single x-ray laser shot. The enormous data sets with up to several million…

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