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Physics-based, atom-centered machine learning (ML) representations have been instrumental to the effective integration of ML within the atomistic simulation community. Many of these representations build off the idea of atoms as having…

Computational Physics · Physics 2024-03-29 Arthur Y. Lin , Kevin K. Huguenin-Dumittan , Yong-Cheol Cho , Jigyasa Nigam , Rose K. Cersonsky

Crystal structure prediction (CSP) has proven to be a highly effective route for discovering new materials. Substantial advancements have been made in CSP of inorganic and molecular crystals, while hybrid materials, including metal-organic…

Materials Science · Physics 2024-12-17 Elizaveta Yakovenko , Iurii Nevolin , Anatoliy Chasovskikh , Artem Mitrofanov , Vadim Korolev

Understanding protein dynamics are essential for deciphering protein functional mechanisms and developing molecular therapies. However, the complex high-dimensional dynamics and interatomic interactions of biological processes pose…

Quantitative Methods · Quantitative Biology 2025-05-15 Tiexin Qin , Mengxu Zhu , Chunyang Li , Terry Lyons , Hong Yan , Haoliang Li

The molecular self-assembly of various structures such as micelles and vesicles has been the subject of comprehensive studies. Recently, a new approach to design these structures, the frame-guided assembly, has been developed to progress…

Chemical Physics · Physics 2022-05-11 Simon Raschke , Andreas Heuer

We utilize classical facts from topology to show that the classification problem in machine learning is always solvable under very mild conditions. Furthermore, we show that a softmax classification network acts on an input topological…

Machine Learning · Computer Science 2021-06-22 Mustafa Hajij , Kyle Istvan

Point defects have a strong influence on the physical properties of materials, often dominating the electronic and optical behavior in semiconductors and insulators. The simulation and analysis of point defects is therefore crucial for…

Materials Science · Physics 2024-03-12 Jimmy-Xuan Shen , Lars F. Voss , Joel Basile Varley

The development of high-performance materials for microelectronics, energy storage, and extreme environments depends on our ability to describe and direct property-defining microstructural order. Our present understanding is typically…

Molecular self-organization driven by concerted many-body interactions produces the ordered structures that define both inanimate and living matter. Understanding the physical mechanisms that govern the formation of molecular complexes and…

Chemical Physics · Physics 2023-07-21 Hendrik Jung , Roberto Covino , A Arjun , Peter G. Bolhuis , Gerhard Hummer

All solids yield under sufficiently high mechanical loads. Below yield, the mechanical responses of all disordered solids are nearly alike, but above yield every different disordered solid responds in its own way. Brittle systems can…

We introduce a local order metric (LOM) that measures the degree of order in the neighborhood of an atomic or molecular site in a condensed medium. The LOM maximizes the overlap between the spatial distribution of sites belonging to that…

Computational Physics · Physics 2018-02-21 Fausto Martelli , Hsin-Yu Ko , Erdal C. Oguz , Roberto Car

The automation of condition monitoring and workpiece inspection plays an essential role in maintaining high quality as well as high throughput of the manufacturing process. To this end, the recent rise of developments in machine learning…

Machine Learning · Computer Science 2022-01-19 Michael Banf , Gregor Steinhagen

Efficient and accurate classification of waste and industrial surface defects is essential for ensuring sustainable waste management and maintaining high standards in quality control. This paper introduces the Neuroplastic Modular…

Computer Vision and Pattern Recognition · Computer Science 2025-10-07 Debojyoti Ghosh , Soumya K Ghosh , Adrijit Goswami

This article discusses electromagnetic properties of volumetric metamaterial samples with essentially discrete structure, that is, assembled as a periodic array of electromagnetic resonators. We develop an efficient numerical procedure for…

Applied Physics · Physics 2025-09-19 Aleksander O. Makarenko , Maxim A. Yurkin , Alexey A. Shcherbakov , Mikhail Lapine

Colloidal particles dispersed in liquid crystals can form new materials with tunable elastic and electro-optic properties. In a periodic `blue phase' host, particles should template into colloidal crystals with potential uses in photonics,…

Soft Condensed Matter · Physics 2015-04-21 K. Stratford , O. Henrich , J. S. Lintuvuori , M. E. Cates , D. Marenduzzo

The anomalous behavior of liquid water is widely associated with a liquid-liquid phase transition between high- and low-density states in the supercooled regime. At the microscopic level, tetrahedral hydrogen-bond networks govern these…

Soft Condensed Matter · Physics 2026-05-04 Kohei Yoshikawa , Kokoro Shikata , Kang Kim , Nobuyuki Matubayasi

Colloidal particles can spontaneously self-assemble into ordered structures, which not only can manipulate the propagation of light, but also vibration or phonons. Using Monte Carlo simulation, we study the self-assembly of perfectly…

Soft Condensed Matter · Physics 2024-03-11 Ji-Dong Hu , Ting Wang , Qun-Li Lei , Yu-qiang Ma

Additive manufacturing of a single crystalline metallic column is studied using molecular dynamics simulations. In the model, a melt pool is incrementally added and cooled to a target temperature under isobaric conditions to build a…

Materials Science · Physics 2021-01-18 Gurmeet Singh , Anthony M. Waas , Veera Sundararaghavan

The process of gathering and associating data from multiple sensors or sub-detectors due to a common physical event (the process of event-building) is used in many fields, including high-energy physics and $\gamma$-ray astronomy. Fault…

Instrumentation and Methods for Astrophysics · Physics 2015-09-09 Amanda Weinstein , Lucy Fortson , Thomas Brantseg , Cameron Rulten , Robyn Lutz , Jarvis Haupt , Mojtaba Kakhodaie Elyaderani , John Quinn

In this work, we present the development of a neuro-inspired approach for characterizing sensorimotor relations in robotic systems. The proposed method has self-organizing and associative properties that enable it to autonomously obtain…

Robotics · Computer Science 2019-05-02 Omar Zahra , David Navarro-Alarcon

Crystallography may be the gold standard of protein structure determination, but obtaining the necessary high-quality crystals is also in some ways akin to prospecting for the precious metal. The tools and models developed in soft matter…

Soft Condensed Matter · Physics 2016-02-10 Diana Fusco , Patrick Charbonneau
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