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This study conducts a comparative analysis of stochastic and deterministic models to better understand the dynamics of the HIV epidemic across genders. By incorporating gender-specific transmission probabilities and treatment uptake rates,…

Populations and Evolution · Quantitative Biology 2025-01-30 Nuzhat Nuari Khan Rivu , Md Kamrujjaman , Shohel Ahmed

This paper is devoted to the study of a stochastic epidemiological model which is a variant of the SIR model to which we add an extra factor in the transition rate from susceptible to infected accounting for the inflow of infection due to…

Analysis of PDEs · Mathematics 2021-06-29 Gadi Fibich , Samuel Nordmann

A diffusive epidemic model with an infection-dependent recovery rate is formulated in this paper. Multiple constant steady states and spatially homogeneous periodic solutions are first proven by bifurcation analysis of the reaction…

Dynamical Systems · Mathematics 2025-09-12 Wael El Khateeb , Chanaka Kottegoda , Chunhua Shan

Bacterial populations often have complex spatial structures, which can impact their evolution. Here, we study how spatial structure affects the evolution of antibiotic resistance in a bacterial population. We consider a minimal model of…

Populations and Evolution · Quantitative Biology 2024-12-23 Cecilia Fruet , Ella Linxia Müller , Claude Loverdo , Anne-Florence Bitbol

Understanding infectious disease spread remains a critical public health challenge, particularly given the interplay between household dynamics and community transmission patterns. Traditional epidemiological models often oversimplify these…

Populations and Evolution · Quantitative Biology 2026-01-21 Houda Yaqine , Christiane Fuchs

The process of infection of a host is complex, influenced by factors such as microbial variation within and between hosts as well as differences in dose across hosts. This study uses dose-response and within-host microbial infection models…

Populations and Evolution · Quantitative Biology 2025-04-10 Francisco J. Perez-Reche

Mathematical modelling can help to explain the nature and dynamics of infection transmissions, as well as support a policy for implementing those strategies that are most likely to bring public health and economic benefits. The paper…

Optimization and Control · Mathematics 2015-09-01 Roman Denysiuk , Cristiana J. Silva , Delfim F. M. Torres

We analyse an epidemiological model of competing strains of pathogens and hence differences in transmission for first versus secondary infection due to interaction of the strains with previously aquired immunities, as has been described for…

Populations and Evolution · Quantitative Biology 2008-06-30 Maira Aguiar , Nico Stollenwerk , Bob W. Kooi

This paper introduces a novel hybrid model combining Partial Differential Equations (PDEs) and Ordinary Differential Equations (ODEs) to simulate infectious disease dynamics across geographic regions. By leveraging the spatial detail of…

Dynamical Systems · Mathematics 2025-11-18 Kristina Kehrer , Martin Weiser , Tim Conrad

Sexually transmitted infections (STIs) continue to present a complex and costly challenge to public health programs. The preferences and social dynamics of a population can have a large impact on the course of an outbreak as well as the…

Populations and Evolution · Quantitative Biology 2015-06-30 Michael A. L. Hayashi , Marisa C. Eisenberg

We introduce delays in a tuberculosis (TB) model, representing the time delay on the diagnosis and commencement of treatment of individuals with active TB infection. The stability of the disease free and endemic equilibriums is investigated…

Optimization and Control · Mathematics 2016-10-07 Cristiana J. Silva , Helmut Maurer , Delfim F. M. Torres

Clinicians need to predict patient outcomes with high accuracy as early as possible after disease inception. In this manuscript, we show that patient-to-patient variability sets a fundamental limit on outcome prediction accuracy for a…

Quantitative Methods · Quantitative Biology 2016-02-17 Manuel Mai , Kun Wang , Greg Huber , Michael Kirby , Mark D. Shattuck , Corey S. O'Hern

We study an individual-based stochastic spatial epidemic model where the number of locations and the number of individuals at each location both grow to infinity. Each individual is associated with a random infection-age dependent…

Probability · Mathematics 2025-10-21 Guodong Pang , Etienne Pardoux

Growth in bacterial populations generally depends on the environment (availability and quality of nutrients, presence of a toxic inhibitor, product inhibition..). Here, we build a model to describe the action of a bacteriostatic antibiotic,…

Biological Physics · Physics 2025-06-25 Barnabe Ledoux , David Lacoste

Recent clinical studies have shown that HIV disease pathogenesis can depend strongly on many factors at the time of transmission, including the strength of the initial viral load and the local availability of CD4+ T-cells. In this article,…

Populations and Evolution · Quantitative Biology 2019-10-15 Stephen Pankavich , Nathan Neri , Deborah Shutt

Bacteria develop resistance to antibiotics through various mechanisms, with the specific mechanism depending on the drug-bacteria pair. It remains unclear, however, which resistance mechanism best supports favorable treatment outcomes,…

Populations and Evolution · Quantitative Biology 2025-11-06 Ailin Zhang , Shigui Ruan , Xi Huo

Dengue is a vector-borne viral disease increasing dramatically over the past years due to improvement in human mobility. The movement of host individuals between and within the patches are captured via a residence-time matrix. A system of…

Populations and Evolution · Quantitative Biology 2018-10-04 Wolfgang Bock , Yashika Jayathunga

We introduce a stochastic household model for vector-borne diseases, in particular as relevant to prominent vectors belonging to the Aedes genus and hence the Zika, chikungunya, and dengue viruses. In this model, vectors remain local to…

Populations and Evolution · Quantitative Biology 2022-03-01 Andrew Black , Andrew Smith , Alun Lloyd , Joshua Ross

Magombedze and Mulder in 2013 studied the gene regulatory system of Mycobacterium Tuberculosis (Mtb) by partitioning this into three subsystems based on putative gene function and role in dormancy/latency development. Each subsystem, in the…

Molecular Networks · Quantitative Biology 2020-01-22 Honeylou F. Farinas , Eduardo R. Mendoza , Angelyn R. Lao

We apply optimal control theory to a tuberculosis model given by a system of ordinary differential equations. Optimal control strategies are proposed to minimize the cost of interventions, considering reinfection and post-exposure…

Optimization and Control · Mathematics 2013-07-15 Cristiana J. Silva , Delfim F. M. Torres