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In recent years, with the growing amount of biomedical documents, coupled with advancement in natural language processing algorithms, the research on biomedical named entity recognition (BioNER) has increased exponentially. However, BioNER…

Computation and Language · Computer Science 2020-09-22 Usman Naseem , Matloob Khushi , Vinay Reddy , Sakthivel Rajendran , Imran Razzak , Jinman Kim

Deep learning-based language models pretrained on large unannotated text corpora have been demonstrated to allow efficient transfer learning for natural language processing, with recent approaches such as the transformer-based BERT model…

Computation and Language · Computer Science 2019-12-17 Antti Virtanen , Jenna Kanerva , Rami Ilo , Jouni Luoma , Juhani Luotolahti , Tapio Salakoski , Filip Ginter , Sampo Pyysalo

Pre-trained language models have recently contributed to significant advances in NLP tasks. Recently, multi-modal versions of BERT have been developed, using heavy pre-training relying on vast corpora of aligned textual and image data,…

Computation and Language · Computer Science 2020-12-17 Thomas Scialom , Patrick Bordes , Paul-Alexis Dray , Jacopo Staiano , Patrick Gallinari

Bidirectional Encoder Representations from Transformers (BERT) has shown marvelous improvements across various NLP tasks, and its consecutive variants have been proposed to further improve the performance of the pre-trained language models.…

Computation and Language · Computer Science 2021-11-29 Yiming Cui , Wanxiang Che , Ting Liu , Bing Qin , Ziqing Yang

We introduce BERTphone, a Transformer encoder trained on large speech corpora that outputs phonetically-aware contextual representation vectors that can be used for both speaker and language recognition. This is accomplished by training on…

Computation and Language · Computer Science 2022-01-03 Shaoshi Ling , Julian Salazar , Yuzong Liu , Katrin Kirchhoff

Language-guided robots performing home and office tasks must navigate in and interact with the world. Grounding language instructions against visual observations and actions to take in an environment is an open challenge. We present…

Computer Vision and Pattern Recognition · Computer Science 2021-11-05 Alessandro Suglia , Qiaozi Gao , Jesse Thomason , Govind Thattai , Gaurav Sukhatme

Large pre-trained language models help to achieve state of the art on a variety of natural language processing (NLP) tasks, nevertheless, they still suffer from forgetting when incrementally learning a sequence of tasks. To alleviate this…

Computation and Language · Computer Science 2023-03-03 Mingxu Tao , Yansong Feng , Dongyan Zhao

Transformer-based models have led to significant innovation in classical and practical subjects as varied as speech processing, natural language processing, and computer vision. On top of the Transformer, attention-based end-to-end…

Computation and Language · Computer Science 2022-05-19 Fu-Hao Yu , Kuan-Yu Chen

Tremendous amounts of multimedia associated with speech information are driving an urgent need to develop efficient and effective automatic summarization methods. To this end, we have seen rapid progress in applying supervised deep neural…

Computation and Language · Computer Science 2020-06-03 Shi-Yan Weng , Tien-Hong Lo , Berlin Chen

Fine-tuned Bidirectional Encoder Representations from Transformers (BERT)-based sequence classification models have proven to be effective for detecting Alzheimer's Disease (AD) from transcripts of human speech. However, previous research…

Computation and Language · Computer Science 2020-11-13 Aparna Balagopalan , Jekaterina Novikova

We introduce a self-supervised vision representation model BEiT, which stands for Bidirectional Encoder representation from Image Transformers. Following BERT developed in the natural language processing area, we propose a masked image…

Computer Vision and Pattern Recognition · Computer Science 2022-09-07 Hangbo Bao , Li Dong , Songhao Piao , Furu Wei

Pretrained contextualized text representation models learn an effective representation of a natural language to make it machine understandable. After the breakthrough of the attention mechanism, a new generation of pretrained models have…

Metagenomic disease prediction commonly relies on species abundance tables derived from large, incomplete reference catalogs, constraining resolution and discarding valuable information contained in DNA reads. To overcome these limitations,…

Genomics · Quantitative Biology 2026-01-08 Gaspar Roy , Eugeni Belda , Baptiste Hennecart , Yann Chevaleyre , Edi Prifti , Jean-Daniel Zucker

The task of Named Entity Recognition (NER) is an important component of many natural language processing systems, such as relation extraction and knowledge graph construction. In this work, we present a simple and effective approach for…

Computation and Language · Computer Science 2022-03-29 Urchade Zaratiana , Pierre Holat , Nadi Tomeh , Thierry Charnois

Specialised transformers-based models (such as BioBERT and BioMegatron) are adapted for the biomedical domain based on publicly available biomedical corpora. As such, they have the potential to encode large-scale biological knowledge. We…

Computation and Language · Computer Science 2022-12-22 Oskar Wysocki , Zili Zhou , Paul O'Regan , Deborah Ferreira , Magdalena Wysocka , Dónal Landers , André Freitas

In this paper, we propose SPBERT, a transformer-based language model pre-trained on massive SPARQL query logs. By incorporating masked language modeling objectives and the word structural objective, SPBERT can learn general-purpose…

Computation and Language · Computer Science 2021-07-02 Hieu Tran , Long Phan , James Anibal , Binh T. Nguyen , Truong-Son Nguyen

Recent advances in natural language processing (NLP) have been driven bypretrained language models like BERT, RoBERTa, T5, and GPT. Thesemodels excel at understanding complex texts, but biomedical literature, withits domain-specific…

Computation and Language · Computer Science 2025-07-28 K. Sahit Reddy , N. Ragavenderan , Vasanth K. , Ganesh N. Naik , Vishalakshi Prabhu , Nagaraja G. S

Large, self-supervised transformer-based language representation models have recently received significant amounts of attention, and have produced state-of-the-art results across a variety of tasks simply by scaling up pre-training on…

Computation and Language · Computer Science 2019-10-25 Alexandre Matton , Luke de Oliveira

Transformer-based masked language models such as BERT, trained on general corpora, have shown impressive performance on downstream tasks. It has also been demonstrated that the downstream task performance of such models can be improved by…

Computation and Language · Computer Science 2023-05-04 Zhi Hong , Aswathy Ajith , Gregory Pauloski , Eamon Duede , Kyle Chard , Ian Foster

In recent years BERT shows apparent advantages and great potential in natural language processing tasks. However, both training and applying BERT requires intensive time and resources for computing contextual language representations, which…

Computation and Language · Computer Science 2021-11-05 Tan Huang