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A number of known techniques for improving cache performance in scientific computations involve the reordering of the iteration space. Some of these reorderings can be considered coverings of the iteration space with sets having small…

Performance · Computer Science 2009-09-29 Michael Frumkin , Rob F. Van der Wijngaart

Simflowny is an open platform which automatically generates efficient parallel code of scientific dynamical models for different simulation frameworks. Here we present major upgrades on this software to support simultaneously a quite…

Computational Physics · Physics 2020-12-02 C. Palenzuela , B. Miñano , A. Arbona , C. Bona-Casas , C. Bona , J. Massó

Solving partial differential equations (PDEs) within the framework of probabilistic numerics offers a principled approach to quantifying epistemic uncertainty arising from discretization. By leveraging Gaussian process regression and…

Machine Learning · Statistics 2025-08-18 Akshay Thakur , Sawan Kumar , Matthew Zahr , Souvik Chakraborty

Advancements in tools like Shapely 2.0 and Triton can significantly improve the efficiency of spatial similarity computations by enabling faster and more scalable geometric operations. However, for extremely large datasets, these…

Machine Learning · Computer Science 2025-09-30 John N. Daras

The implementation of efficient multigrid preconditioners for elliptic partial differential equations (PDEs) is a challenge due to the complexity of the resulting algorithms and corresponding computer code. For sophisticated finite element…

Mathematical Software · Computer Science 2016-10-07 Lawrence Mitchell , Eike Hermann Müller

Multigrid methods have proven to be an invaluable tool to efficiently solve large sparse linear systems arising in the discretization of partial differential equations (PDEs). Algebraic multigrid methods and in particular adaptive algebraic…

Numerical Analysis · Mathematics 2020-04-27 Hanno Gottschalk , Karsten Kahl

When modeling scientific and industrial problems, geometries are typically modeled by explicit boundary representations obtained from computer-aided design software. Unfitted (also known as embedded or immersed) finite element methods offer…

Computational Engineering, Finance, and Science · Computer Science 2024-05-24 Pere A. Martorell , Santiago Badia

Lossy compression is widely used to reduce storage and I/O costs for large-scale particle datasets in scientific applications such as cosmology, molecular dynamics, and fluid dynamics, where clustering structures (e.g., single-linkage or…

Machine Learning · Computer Science 2026-04-22 Congrong Ren , Sheng Di , Katrin Heitmann , Franck Cappello , Hanqi Guo

This article is the updated version of the paper: "Combined 3D thinning and greedy algorithm to approximate realistic particles with corrected mechanical properties, Granular Matter (2019)" by the first author [58]. The main changes here…

Applied Physics · Physics 2024-01-09 Fei-Liang Yuan

Conforming hexahedral (hex) meshes are favored in simulation for their superior numerical properties, yet automatically decomposing a general 3D volume into a conforming hex mesh remains a formidable challenge. Among existing approaches,…

Computational Geometry · Computer Science 2026-01-07 Hua Tong , Yongjie Jessica Zhang

We introduce a collection of benchmark problems in 2D and 3D (geometry description and boundary conditions), including simple cases with known analytic solution, classical experimental setups, and complex geometries with fabricated…

Computational Engineering, Finance, and Science · Computer Science 2021-12-13 Zizhou Huang , Teseo Schneider , Minchen Li , Chenfanfu Jiang , Denis Zorin , Daniele Panozzo

This paper presents an immersed, isogeometric finite element framework to predict the response of multi-material, multi-physics problems with complex geometries using locally refined discretizations. To circumvent the need to generate…

Numerical Analysis · Mathematics 2022-12-05 Mathias Schmidt , Lise Noel , Keenan Doble , John A. Evans , Kurt Maute

We propose an extension of the discretization approaches for multilayer shallow water models, aimed at making them more flexible and efficient for realistic applications to coastal flows. A novel discretization approach is proposed, in…

Numerical Analysis · Mathematics 2018-04-18 Luca Bonaventura , Enrique D. Fernández-Nieto , José Garres-Díaz , Gladys Narbona-Reina

We present a high-order spacetime numerical method for discretizing and solving linear initial-boundary value problems using wavelet-based techniques with user-prescribed error estimates. The spacetime wavelet discretization yields a system…

Numerical Analysis · Mathematics 2025-09-04 Cody D. Cochran , Karel Matous

In this work, we formulate and analyze a geometric multigrid method for the iterative solution of the discrete systems arising from the finite element discretization of symmetric second-order linear elliptic diffusion problems. We show that…

Numerical Analysis · Mathematics 2024-01-17 Michael Innerberger , Ani Miraçi , Dirk Praetorius , Julian Streitberger

We present a new multigrid scheme for solving the Poisson equation with Dirichlet boundary conditions on a Cartesian grid with irregular domain boundaries. This scheme was developed in the context of the Adaptive Mesh Refinement (AMR)…

Computational Physics · Physics 2011-05-16 Thomas Guillet , Romain Teyssier

The performance and efficiency of distributed training of Deep Neural Networks highly depend on the performance of gradient averaging among all participating nodes, which is bounded by the communication between nodes. There are two major…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-02-10 Linnan Wang , Wei Wu , Junyu Zhang , Hang Liu , George Bosilca , Maurice Herlihy , Rodrigo Fonseca

We present a novel continuous optimization method to the discrete problem of quadtree optimization. The optimization aims at achieving a quadtree structure with the highest mechanical stiffness, where the edges in the quadtree are…

Numerical Analysis · Mathematics 2018-05-23 Jun Wu

Efficiently and accurately simulating partial differential equations (PDEs) in and around arbitrarily defined geometries, especially with high levels of adaptivity, has significant implications for different application domains. A key…

Stochastic sampling methods are arguably the most direct and least intrusive means of incorporating parametric uncertainty into numerical simulations of partial differential equations with random inputs. However, to achieve an overall error…

Numerical Analysis · Mathematics 2014-04-09 Hans-Werner van Wyk