Related papers: Novel Algorithms for Efficient Mining of Connected…
Given a graph $G$, the maximal induced subgraphs problem asks to enumerate all maximal induced subgraphs of $G$ that belong to a certain hereditary graph class. While its optimization version, known as the minimum vertex deletion problem in…
We give a polynomial delay algorithm, that for any graph $G$ and positive integer $k$, enumerates all connected induced subgraphs of $G$ of order $k$. Our algorithm enumerates each subgraph in at most…
Subgraph counting is a fundamental problem in understanding and analyzing graph structured data, yet computationally challenging. This calls for an accurate and efficient algorithm for Subgraph Cardinality Estimation, which is to estimate…
The problem of enumerating all connected induced subgraphs of a given order $k$ from a given graph arises in many practical applications: bioinformatics, information retrieval, processor design,to name a few. The upper bound on the number…
Subgraph enumeration problems ask to output all subgraphs of an input graph that belongs to the specified graph class or satisfy the given constraint. These problems have been widely studied in theoretical computer science. As far, many…
Computing subgraph frequencies is a fundamental task that lies at the core of several network analysis methodologies, such as network motifs and graphlet-based metrics, which have been widely used to categorize and compare networks from…
Given graphs $G$ and $H$, we propose a method to implicitly enumerate topological-minor-embeddings of $H$ in $G$ using decision diagrams. We show a useful application of our method to enumerating subgraphs characterized by forbidden…
Partitioning a graph into balanced components is important for several applications. For multi-objective problems, it is useful not only to find one solution but also to enumerate all the solutions with good values of objectives. However,…
To understand the structure of a network, it can be useful to break it down into its constituent pieces. This is the approach taken in a multitude of successful network analysis methods, such as motif analysis. These methods require one to…
Induced bipartite subgraphs of maximal vertex cardinality are an essential concept for the analysis of graphs. Yet, discovering them in large graphs is known to be computationally hard. Therefore, we consider in this work a weaker notion of…
In recent years, kernel methods are widespread in tasks of similarity measuring. Specifically, graph kernels are widely used in fields of bioinformatics, chemistry and financial data analysis. However, existing methods, especially entropy…
The girth of a graph is the length of its shortest cycle. Due to its relevance in graph theory, network analysis and practical fields such as distributed computing, girth-related problems have been object of attention in both past and…
A transversal of a hypergraph is a set of vertices intersecting each hyperedge. We design and analyze new exponential-time algorithms to enumerate all inclusion-minimal transversals of a hypergraph. For each fixed k>2, our algorithms for…
This work is motivated by the necessity to automate the discovery of structure in vast and evergrowing collection of relational data commonly represented as graphs, for example genomic networks. A novel algorithm, dubbed Graphitour, for…
We study ranked enumeration of join-query results according to very general orders defined by selective dioids. Our main contribution is a framework for ranked enumeration over a class of dynamic programming problems that generalizes…
\emph{$K$-best enumeration}, which asks to output $k$-best solutions without duplication, is a helpful tool in data analysis for many fields. In such fields, graphs typically represent data. Thus subgraph enumeration has been paid much…
With the emergence of graph databases, the task of frequent subgraph discovery has been extensively addressed. Although the proposed approaches in the literature have made this task feasible, the number of discovered frequent subgraphs is…
The problem of enumerating connected subgraphs of a given size in a graph has been extensively studied in recent years. In this paper, we propose an algorithm with a delay of $O(k\Delta)$ for enumerating all connected induced subgraphs of…
We propose a general method performed over multivalued decision diagrams that enumerates all subgraphs of an input graph that are characterized by input forbidden induced subgraphs. Our method combines elaborations of classical set…
Subgraph counting is a fundamental task that underpins several network analysis methodologies, including community detection and graph two-sample tests. Counting subgraphs is a computationally intensive problem. Substantial research has…