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Development of fast methods to conduct in silico experiments using computational models of cellular signaling is a promising approach toward advances in personalized medicine. However, software-based cellular network simulation has…

Molecular Networks · Quantitative Biology 2018-11-20 Kevin Gilboy , Khaled Sayed , Niteesh Sundaram , Kara Bocan , Natasa Miskov-Zivanov

We present an extension to the robust phase estimation protocol, which can identify incorrect results that would otherwise lie outside the expected statistical range. Robust phase estimation is increasingly a method of choice for…

Software estimation is a crucial task in software engineering. Software estimation encompasses cost, effort, schedule, and size. The importance of software estimation becomes critical in the early stages of the software life cycle when the…

Software Engineering · Computer Science 2016-12-06 Ali Bou Nassif , Luiz Fernando Capretz , Danny Ho

Certification helps to increase trust in formal verification of safety-critical systems which require assurance on their correctness. In hardware model checking, a widely used formal verification technique, phase abstraction is considered…

Symbolic Computation · Computer Science 2024-05-08 Nils Froleyks , Emily Yu , Armin Biere , Keijo Heljanko

Accurately assessing software vulnerabilities is essential for effective prioritization and remediation. While various scoring systems exist to support this task, their differing goals, methodologies and outputs often lead to inconsistent…

Cryptography and Security · Computer Science 2025-08-20 Viktoria Koscinski , Mark Nelson , Ahmet Okutan , Robert Falso , Mehdi Mirakhorli

A key hurdle is demonstrating compute resource capability with limited benchmarks. We propose workflow templates as a solution, offering adaptable designs for specific scientific applications. Our paper identifies common usage patterns for…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-31 Gregor von Laszewski , Wesley Brewer , Sean R. Wilkinson , Andrew Shao , J. P. Fleischer , Harshad Pitkar , Christine R. Kirkpatrick , Geoffrey C. Fox

During software development, developers often make numerous modifications to the software to address existing issues or implement new features. However, certain changes may inadvertently have a detrimental impact on the overall system…

Software Engineering · Computer Science 2024-08-16 Lizhi Liao , Simon Eismann , Heng Li , Cor-Paul Bezemer , Diego Elias Costa , Andre van Hoorn , Weiyi Shang

Recent progress in automated repair of performance bugs demands realistic, executable benchmarks. However, existing C++ performance benchmarks are largely built from competitive programming submissions, and recent real-world benchmarks…

Software Engineering · Computer Science 2026-05-12 Tommy Ho , Khashayar Etemadi , Zhendong Su

Performance models that statically predict the steady-state throughput of basic blocks on particular microarchitectures, such as IACA, Ithemal, llvm-mca, OSACA, or CQA, can guide optimizing compilers and aid manual software optimization.…

Performance · Computer Science 2022-05-23 Andreas Abel , Jan Reineke

Complex phenomena in engineering and the sciences are often modeled with computationally intensive feed-forward simulations for which a tractable analytic likelihood does not exist. In these cases, it is sometimes necessary to estimate an…

Methodology · Statistics 2020-06-18 Niccolò Dalmasso , Ann B. Lee , Rafael Izbicki , Taylor Pospisil , Ilmun Kim , Chieh-An Lin

Developing efficient GPU kernels can be difficult because of the complexity of GPU architectures and programming models. Existing performance tools only provide coarse-grained suggestions at the kernel level, if any. In this paper, we…

Performance · Computer Science 2020-11-25 Keren Zhou , Xiaozhu Meng , Ryuichi Sai , John Mellor-Crummey

CPU branch prediction has hit a wall--existing techniques achieve near-perfect accuracy on 99% of static branches, and yet the mispredictions that remain hide major performance gains. In a companion report, we show that a primary source of…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-25 Stephen J Tarsa , Chit-Kwan Lin , Gokce Keskin , Gautham Chinya , Hong Wang

In this paper, we take a deep dive into microarchitectural security from a hardware designer's perspective by reviewing the existing approaches to detect hardware vulnerabilities during the design phase. We show that a protection gap…

Voice-based biometric systems are highly prone to spoofing attacks. Recently, various countermeasures have been developed for detecting different kinds of attacks such as replay, speech synthesis (SS) and voice conversion (VC). Most of the…

Multimedia · Computer Science 2020-08-07 Dipjyoti Paul , Md Sahidullah , Goutam Saha

Matlab/Simulink is a development and simulation language that is widely used by the Cyber-Physical System (CPS) industry to model dynamical systems. There are two mainstream approaches to verify CPS Simulink models: model testing that…

Software Engineering · Computer Science 2019-05-10 Shiva Nejati , Khouloud Gaaloul , Claudio Menghi , Lionel C. Briand , Stephen Foster , David Wolfe

Understanding the behavior of simulated architectures in gem5 is critical for studying complex, deeply integrated computing systems. However, conventional analysis methods provide only an indirect view of the simulated system internals. In…

Hardware Architecture · Computer Science 2026-05-05 Johan Söderström , Rashid Aligholipour , Yuan Yao

Context: Mining software repositories is a popular means to gain insights into a software project's evolution, monitor project health, support decisions and derive best practices. Tools supporting the mining process are commonly applied by…

Software Engineering · Computer Science 2025-11-13 Nicole Hoess , Carlos Paradis , Rick Kazman , Wolfgang Mauerer

As models become larger, ML accelerators are a scarce resource whose performance must be continually optimized to improve efficiency. Existing performance analysis tools are coarse grained, and fail to capture model performance at the…

Performance · Computer Science 2025-03-20 Ioannis Zarkadas , Amanda Tomlinson , Asaf Cidon , Baris Kasikci , Ofir Weisse

In recent years, several hardware-based countermeasures proposed to mitigate Spectre attacks have been shown to be insecure. To enable the development of effective secure speculation countermeasures, we need easy-to-use tools that can…

We analyze safety problems of complex systems using the methods of mathematical statistics for testing the output variables of a code simulating the operation of the system under consideration when the input variables are uncertain. We have…

Data Analysis, Statistics and Probability · Physics 2007-05-23 L. Pal , M. Makai
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