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RNA structure and functional dynamics play fundamental roles in controlling biological systems. Molecular dynamics simulation, which can characterize interactions at an atomistic level, can advance the understanding on new drug discovery,…

Molecular Networks · Quantitative Biology 2023-06-21 Hua Zheng , Wei Xie , Paul Whitford , Ailun Wang , Chunsheng Fang , Wandi Xu

Finite-dimensional dissipative dynamical systems with multiple time-scales are obtained when modeling chemical reaction kinetics with ordinary differential equations. Such stiff systems are computationally hard to solve and therefore,…

Optimization and Control · Mathematics 2019-07-03 Marcus Heitel , Robin Verschueren , Moritz Diehl , Dirk Lebiedz

This paper establishes a general framework for describing hybrid dynamical systems which is particularly suitable for numerical simulation. In this context, the data structures used to describe the sets and functions which comprise the…

chao-dyn · Physics 2008-02-03 Allen Back , John Guckenheimer , Mark Myers

Automation systems exist in many variants and may evolve over time in order to deal with different environment contexts or to fulfill changing customer requirements. This induces an increased complexity during design-time as well as tedious…

Software Engineering · Computer Science 2016-04-04 Matthias Kowal , Ina Schaefer

When discussing future concerns within socio-technical systems in work contexts, we often find descriptions of missed technology development and integration. The experience of technology that fails whilst being integrated is often rooted in…

Human-Computer Interaction · Computer Science 2021-07-09 Sarah Janboecke , Susanne Zajitschek

Often models for understanding the impact of management practices on retail performance are developed under the assumption of stability, equilibrium and linearity, whereas retail operations are considered in reality to be dynamic,…

Artificial Intelligence · Computer Science 2010-07-05 Peer-Olaf Siebers , Uwe Aickelin , Helen Celia , Chris Clegg

In this review we address to what extent computational techniques can augment our ability to predict toxicity. The first section provides a brief history of empirical observations on toxicity dating back to the dawn of Sumerian…

Molecular Networks · Quantitative Biology 2018-01-17 Narsis A. Kiani , Ming-Mei Shang , Hector Zenil , Jesper Tegnér

For the application of MPC design in on-line regulation or tracking control problems, several studies have attempted to develop an accurate model, and realize adequate uncertainty description of linear or non-linear plants of the processes.…

Optimization and Control · Mathematics 2019-04-03 Yuanqiang Zhou , Dewei Li , Yugeng Xi , Zhongxue Gan

Since the turn of the millennium, computational modelling of biological systems has evolved remarkably and sees matured use spanning basic and clinical research. While the topic of the peri-millennial debate about the virtues and…

Quantitative Methods · Quantitative Biology 2025-08-05 Axel Loewe , Peter J. Hunter , Peter Kohl

As in the car industry for quite some time, dynamic simulation of complete vehicles is being practiced more and more in the development of off-road machinery. However, specific questions arise due not only to company structure and size, but…

Computational Engineering, Finance, and Science · Computer Science 2011-08-30 Reno Filla , Jan-Ove Palmberg

Analytics play an important role in modern business. Companies adapt data science lifecycles to their culture to seek productivity and improve their competitiveness among others. Data science lifecycles are fairly an important contributing…

Machine Learning · Computer Science 2025-10-09 Rohith Mahadevan

Within Process mining, discovery techniques had made it possible to construct business process models automatically from event logs. However, results often do not achieve the balance between model complexity and its fitting accuracy, so…

Artificial Intelligence · Computer Science 2023-01-18 Liubov O. Elkhovskaya , Alexander D. Kshenin , Marina A. Balakhontceva , Sergey V. Kovalchuk

Product Data Management (PDM) desktop and web based systems maintain the organizational technical and managerial data to increase the quality of products by improving the processes of development, business process flows, change management,…

Human-Computer Interaction · Computer Science 2011-03-08 Zeeshan Ahmed

In its broadest definition, systems biology is the application of a `systems' way of thinking about and doing cell biology. By implication, this also invites us to consider a systems approach in the context of medicine and the treatment of…

Tissues and Organs · Quantitative Biology 2007-05-23 Peter Wellstead , Rick Middleton , Olaf Wolkenhauer

Dynamic metabolic control allows key metabolic fluxes to be modulated in real time, enhancing bioprocess flexibility and expanding available optimization degrees of freedom. This is achieved, e.g., via targeted modulation of metabolic…

Systems and Control · Electrical Eng. & Systems 2025-10-03 Sebastián Espinel-Ríos , River Walser , Dongda Zhang

Mathematical theory of the quantum systems control is based on some ideas of the optimal control theory. These ideas are developed here as applied to these systems. The results obtained meet the deficiencies in the basis and algorithms of…

Quantum Physics · Physics 2008-05-22 V. F. Krotov

Mathematical models are crucial for optimizing and controlling chemical processes, yet they often face significant limitations in terms of computational time, algorithm complexity, and development costs. Hybrid models, which combine…

The trend in industrial automation is towards networking, intelligence and autonomy. Digital Twins, which serve as virtual representations, are becoming increasingly important in this context. The Digital Twin of a modular production system…

Multiagent Systems · Computer Science 2022-12-08 Daniel Dittler , Peter Lierhammer , Dominik Braun , Timo Müller , Nasser Jazdi , Michael Weyrich

System dynamics is a popular approach in many fields of science and technology, but it has not been investigated for cell signaling pathways yet. It is a well formulated methodology used to analyze the components of a system considering the…

Subcellular Processes · Quantitative Biology 2024-09-04 Sadegh Sulaimany , Gholamreza Bidkhori , Sarbaz H. A. Khoshnaw

A properly designed controller can help improve the quality of experimental measurements or force a dynamical system to follow a completely new time-evolution path. Recent developments in deep reinforcement learning have made steep advances…

Statistical Mechanics · Physics 2025-02-26 Ruslan Mukhamadiarov
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