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Related papers: Sequential Motifs in Observed Walks

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Food webs have been found to exhibit remarkable motif profiles, patterns in the relative prevalences of all possible three-species sub-graphs, and this has been related to ecosystem properties such as stability and robustness. Analysing 46…

Populations and Evolution · Quantitative Biology 2016-09-15 Janis Klaise , Samuel Johnson

Connectivity is a fundamental structural feature of a network that determines the outcome of any dynamics that happens on top of it. However, an analytical approach to obtain connection probabilities between nodes associated to paths of…

Atmospheric and Oceanic Physics · Physics 2021-04-28 Enrico Ser-Giacomi , Terence Legrand , Ismael Hernandez-Carrasco , Vincent Rossi

Networks are a powerful tool to model the structure and dynamics of complex systems across scales. Direct connections between system components are often represented as edges, while paths and walks capture indirect interactions. This…

Physics and Society · Physics 2025-01-15 Rohit Sahasrabuddhe , Renaud Lambiotte , Martin Rosvall

Recurrence networks are a powerful nonlinear tool for time series analysis of complex dynamical systems. {While there are already many successful applications ranging from medicine to paleoclimatology, a solid theoretical foundation of the…

Data Analysis, Statistics and Probability · Physics 2012-04-12 Jonathan F. Donges , Jobst Heitzig , Reik V. Donner , Jürgen Kurths

Previous studies on sequence-based extraction of human movement trajectories have an issue of inadequate trajectory representation. Specifically, a pair of locations may not be lined up in a sequence especially when one location includes…

Computation and Language · Computer Science 2024-10-23 Aitaro Yamamoto , Hiroyuki Otomo , Hiroki Ouchi , Shohei Higashiyama , Hiroki Teranishi , Hiroyuki Shindo , Taro Watanabe

Paths are important structural elements in complex networks because they are finite (unlike walks), related to effective node coverage (minimum spanning trees), and can be understood as being dual to star connectivity. This article…

Physics and Society · Physics 2007-12-05 Luciano da Fontoura Costa

Given a directed acyclic graph with labeled vertices, we consider the problem of finding the most common label sequences ("traces") among all paths in the graph (of some maximum length m). Since the number of paths can be huge, we propose…

Data Structures and Algorithms · Computer Science 2010-10-13 Andrea Campagna , Rasmus Pagh

Finding dense subnetworks, with density based on edges or more complex structures, such as subgraphs or $k$-cliques, is a fundamental algorithmic problem with many applications. While the problem has been studied extensively in static…

Data Structures and Algorithms · Computer Science 2024-06-26 Ilie Sarpe , Fabio Vandin , Aristides Gionis

Network science has emerged as a powerful tool through which we can study the higher-order architectural properties of the world around us. How human learners exploit this information remains an essential question. Here, we focus on the…

Neurons and Cognition · Quantitative Biology 2017-02-02 Elisabeth A. Karuza , Ari E. Kahn , Sharon L. Thompson-Schill , Danielle S. Bassett

One of the defining features of complex networks is the connectivity properties that we observe emerging from local interactions. Recently, hypergraphs have emerged as a versatile tool to model networks with non-dyadic, higher-order…

Physics and Society · Physics 2025-09-30 Berné L. Nortier , Simon Dobson , Federico Battiston

The unprecedented increase of commercial airlines and private jets over the next ten years presents a challenge for air traffic control. Precise flight trajectory prediction is of great significance in air transportation management, which…

Machine Learning · Computer Science 2022-03-18 Kai Zhang , Bowen Chen

Hypergraphs have been a recent focus of study in mathematical data science as a tool to understand complex networks with high-order connections. One question of particular relevance is how to leverage information carried in hypergraph…

Social and Information Networks · Computer Science 2024-05-09 Enzo Battistella , Sean English , Robert Green , Cliff Joslyn , Evgeniya Lagoda , Van Magnan , Audun Myers , Evan D. Nash , Michael Robinson

With the recent development of localization and tracking systems for both indoor and outdoor settings, we consider the problem of sensing, representing and analyzing human movement trajectories that we expect to gather in the near future.…

Networking and Internet Architecture · Computer Science 2017-08-31 Xiaotian Yin , Yu-Yao Lin , Chien-Chun Ni , Jiaxin Ding , Wei Han , Dengpan Zhou , Jie Gao , Xianfeng Gu

In physics, biology and engineering, network systems abound. How does the connectivity of a network system combine with the behavior of its individual components to determine its collective function? We approach this question for networks…

Neurons and Cognition · Quantitative Biology 2018-12-19 Yu Hu , Steven L. Brunton , Nicholas Cain , Stefan Mihalas , J. Nathan Kutz , Eric Shea-Brown

Biological and technological networks contain patterns, termed network motifs, which occur far more often than in randomized networks. Network motifs were suggested to be elementary building blocks that carry out key functions in the…

Molecular Networks · Quantitative Biology 2009-11-10 N. Kashtan , S. Itzkovitz , R. Milo , U. Alon

One of the most important concepts in biological network analysis is that of network motifs, which are patterns of interconnections that occur in a given network at a frequency higher than expected in a random network. In this work we are…

Discrete Mathematics · Computer Science 2020-05-29 Diego P Rubert , Eloi Araujo , Marco A Stefanes , Jens Stoye , Fábio V Martinez

We present an algorithm to compute path homology for simple digraphs, and use it to topologically analyze various small digraphs en route to an analysis of complex temporal networks which exhibit such digraphs as underlying motifs. The…

Social and Information Networks · Computer Science 2021-01-15 Samir Chowdhury , Steve Huntsman , Matvey Yutin

In complex systems, groups of interacting objects may form prevalent and persistent spatiotemporal patterns, which we refer to as motifs. These motifs can exhibit features that reveal how individual objects interact with one another.…

Biological Physics · Physics 2025-12-12 Ying Chen Lim , Rakesh Das , Tetsuya Hiraiwa , N. Duane Loh

Recent years have witnessed a surge of interest in machine learning on graphs and networks with applications ranging from vehicular network design to IoT traffic management to social network recommendations. Supervised machine learning…

Social and Information Networks · Computer Science 2019-08-23 Manoj Reddy Dareddy , Mahashweta Das , Hao Yang

How does connectivity impact network dynamics? We address this question by linking network characteristics on two scales. On the global scale we consider the coherence of overall network dynamics. We show that such \emph{global coherence}…

Neurons and Cognition · Quantitative Biology 2013-12-13 Yu Hu , James Trousdale , Krešimir Josić , Eric Shea-Brown
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