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We show that a set of gates that consists of all one-bit quantum gates (U(2)) and the two-bit exclusive-or gate (that maps Boolean values $(x,y)$ to $(x,x \oplus y)$) is universal in the sense that all unitary operations on arbitrarily many…

Identification of attractors, that is, stable states and sustained oscillations, is an important step in the analysis of Boolean models and exploration of potential variants. We describe an approach to the search for asynchronous cyclic…

Discrete Mathematics · Computer Science 2024-03-29 Elisa Tonello , Loïc Paulevé

A single physical interaction might not be universal for quantum computation in general. It has been shown, however, that in some cases it can generate universal quantum computation over a subspace. For example, by encoding logical qubits…

Quantum Physics · Physics 2007-05-23 M. Hsieh , J. Kempe , S. Myrgren , K. B. Whaley

Line attractors in neuronal networks have been suggested to be the basis of many brain functions, such as working memory, oculomotor control, head movement, locomotion, and sensory processing. In this paper, we make the connection between…

Neurons and Cognition · Quantitative Biology 2017-11-30 Zhuocheng Xiao , Jiwei Zhang , Andrew T. Sornborger , Louis Tao

The description of gene interactions that constantly occur in the cellular environment is an extremely challenging task due to an immense number of degrees of freedom and incomplete knowledge about microscopic details. Hence, a…

Quantum Physics · Physics 2024-08-19 Mirko Rossini , Felix M. Weidner , Joachim Ankerhold , Hans A. Kestler

Despite their apparent simplicity, random Boolean networks display a rich variety of dynamical behaviors. Much work has been focused on the properties and abundance of attractors. The topologies of random Boolean networks with one input per…

Disordered Systems and Neural Networks · Physics 2009-11-11 Björn Samuelsson , Carl Troein

It has been recently shown that a learning transition happens when a Hopfield Network stores examples generated as superpositions of random features, where new attractors corresponding to such features appear in the model. In this work we…

Disordered Systems and Neural Networks · Physics 2024-07-09 Silvio Kalaj , Clarissa Lauditi , Gabriele Perugini , Carlo Lucibello , Enrico M. Malatesta , Matteo Negri

The hybrid approach to quantum computation simultaneously utilizes both discrete and continuous variables which offers the advantage of higher density encoding and processing powers for the same physical resources. Trapped ions, with…

Quantum Physics · Physics 2020-05-06 H. C. J. Gan , Gleb Maslennikov , Ko-Wei Tseng , Chihuan Nguyen , Dzmitry Matsukevich

Although individual neurons and neural populations exhibit the phenomenon of representational drift, perceptual and behavioral outputs of many neural circuits can remain stable across time scales over which representational drift is…

The rapid growth of the size and complexity in deep neural networks has sharply increased computational demands, challenging their efficient deployment in real-world scenarios. Boolean networks, constructed with logic gates, offer a…

Machine Learning · Computer Science 2024-09-12 Youngsung Kim

A universal set of quantum gates is constructed for the recently developed jump-error correcting quantum codes. These quantum codes are capable of correcting errors arising from the spontaneous decay of distinguishable qubits into…

Quantum Physics · Physics 2007-05-23 G. Alber , M. Mussinger , A. Delgado

Energy-based probabilistic models learned by maximizing the likelihood of the data are limited by the intractability of the partition function. A widely used workaround is to maximize the pseudo-likelihood, which replaces the global…

Statistical Mechanics · Physics 2026-03-31 Francesco D'Amico , Dario Bocchi , Luca Maria Del Bono , Saverio Rossi , Matteo Negri

Dynamics play a critical role in computation. The principled evolution of states over time enables both biological and artificial networks to represent and integrate information to make decisions. In the past few decades, significant…

Neurons and Cognition · Quantitative Biology 2023-11-28 Jason Z. Kim , Bart Larsen , Linden Parkes

We consider continuous time Hopfield-like recurrent networks as dynamical models for gene regulation and neural networks. We are interested in networks that contain n high-degree nodes preferably connected to a large number of Ns weakly…

Molecular Networks · Quantitative Biology 2016-08-03 Sergei Vakulenko , Ivan Morozov , Ovidiu Radulescu

We propose an algorithm grounded in dynamical systems theory that generalizes manifold learning from a global state representation, to a network of local interacting manifolds termed a Generative Manifold Network (GMN). Manifolds are…

In conventional circuit-based quantum computing architectures, the standard gate set includes arbitrary single-qubit rotations and two-qubit entangling gates. This choice is not always aligned with the native operations available in certain…

Quantum Physics · Physics 2025-03-03 Vinit Singh , Bin Yan

We present and discuss the results of an experimental analysis in the design of Boolean networks by means of genetic algorithms. A population of networks is evolved with the aim of finding a network such that the attractor it reaches is of…

Neural and Evolutionary Computing · Computer Science 2011-02-01 Andrea Roli , Cristian Arcaroli , Marco Lazzarini , Stefano Benedettini

Providing the neurobiological basis of information processing in higher animals, spiking neural networks must be able to learn a variety of complicated computations, including the generation of appropriate, possibly delayed reactions to…

Neurons and Cognition · Quantitative Biology 2016-06-30 Dominik Thalmeier , Marvin Uhlmann , Hilbert J. Kappen , Raoul-Martin Memmesheimer

Boolean networks are a popular modeling framework in computational biology to capture the dynamics of molecular networks, such as gene regulatory networks. It has been observed that many published models of such networks are defined by…

Molecular Networks · Quantitative Biology 2019-12-06 Elijah Paul , Gleb Pogudin , William Qin , Reinhard Laubenbacher

Neural networks are often used to process information from image-based sensors to produce control actions. While they are effective for this task, the complex nature of neural networks makes their output difficult to verify and predict,…

Machine Learning · Computer Science 2021-05-18 Sydney M. Katz , Anthony L. Corso , Christopher A. Strong , Mykel J. Kochenderfer