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The displacement of a fluid by another less viscous one in a quasi-two dimensional geometry typically leads to complex fingering patterns. In an isotropic system, dense-branching growth arises, which is characterized by repeated…

Fluid Dynamics · Physics 2021-01-19 Qing Zhang , Amin Amooie , Martin Z. Bazant , Irmgard Bischofberger

Recently, the prospects for amorphous phases of graphene (a-G) have been explored computationally. Initial models were flat, and contained odd-member rings, while maintaining three-fold coordination and sp2 bonding. Upon relaxation,…

Disordered Systems and Neural Networks · Physics 2015-06-11 Y. Li , D. A. Drabold

Stem cell heterogeneity is essential for the homeostasis in tissue development. This paper established a general formulation for understanding the dynamics of stem cell regeneration with cell heterogeneity and random transitions of…

Populations and Evolution · Quantitative Biology 2024-07-12 Jinzhi Lei

Vegetation patterns are a characteristic feature of semi-arid regions. On hillsides these patterns occur as stripes running parallel to the contours. The Klausmeier model, a coupled reaction-advection-diffusion system, is a deliberately…

Populations and Evolution · Quantitative Biology 2019-12-03 Lukas Eigentler , Jonathan A. Sherratt

Step meandering due to a deterministic morphological instability on vicinal surfaces during growth is studied. We investigate nonlinear dynamics of a step model with asymmetric step kinetics, terrace and line diffusion, by means of a…

Statistical Mechanics · Physics 2009-10-31 F. Gillet , O. Pierre-Louis , C. Misbah

Recent experiments suggest that the interplay between cells and the mechanics of their substrate gives rise to a diversity of morphological and migrational behaviors. Here, we develop a Cellular Potts Model of polarizing cells on a…

Faithful segregation of genetic material during cell division requires alignment of chromosomes between two spindle poles and attachment of their kinetochores to each of the poles. Failure of these complex dynamical processes leads to…

Biological Physics · Physics 2015-12-08 Zsolt Bertalan , Zoe Budrikis , Caterina A. M. La Porta , Stefano Zapperi

We introduce a class of 1D models mimicking a single-lane bridge with two junctions and two particle species driven in opposite directions. The model exhibits spontaneous symmetry breaking (SSB) for a range of injection/extraction rates. In…

Statistical Mechanics · Physics 2011-04-26 Vladislav Popkov , Martin R. Evans , David Mukamel

Understanding the rules underlying organismal development is a major unsolved problem in biology. Each cell in a developing organism responds to signals in its local environment by dividing, excreting, consuming, or reorganizing, yet how…

Cell Behavior · Quantitative Biology 2025-08-20 Ramya Deshpande , Francesco Mottes , Ariana-Dalia Vlad , Michael P. Brenner , Alma dal Co

We investigated the growth-temperature relationship in plants using a quantitative perspective of a recently derived growth functional. We showed that auxin-induced growth is achieved by the diffusion rate, which is almost constant or…

Cell Behavior · Quantitative Biology 2015-08-04 Mariusz Pietruszka , Aleksandra Haduch-Sendecka

The plant hormone auxin controls many aspects of the development of plants. One striking dynamical feature is the self-organisation of leaf venation patterns which is driven by high levels of auxin within vein cells. The auxin transport is…

Dynamical Systems · Mathematics 2019-12-20 Jan Haskovec , Henrik Jönsson , Lisa Maria Kreusser , Peter Markowich

Stem cells, through their ability to produce daughter stem cells and differentiate into specialized cells, are essential in the growth, maintenance, and repair of biological tissues. Understanding the dynamics of cell populations in the…

Applications · Statistics 2026-02-02 Huyen Nguyen , Haim Bar , Zhiyi Chi , Vladimir Pozdnyakov

We prove asymptotic normality for the number of fringe subtrees isomorphic to any given tree in uniformly random trees with given vertex degrees. As applications, we also prove corresponding results for random labelled trees with given…

Probability · Mathematics 2023-12-08 Gabriel Berzunza Ojeda , Cecilia Holmgren , Svante Janson

We consider an active Ising model in which spins both diffuse and align on lattice in one and two dimensions. The diffusion is biased so that plus or minus spins hop preferably to the left or to the right, which generates a flocking…

Statistical Mechanics · Physics 2013-09-09 A. Solon , J. Tailleur

Arbuscular mycorrhiza (AM) is the most wide-spread plant-fungus symbiosis on earth. Investigating this kind of symbiosis is considered one of the most promising ways to develop methods to nurture plants in more natural manners, avoiding the…

Logic in Computer Science · Computer Science 2011-09-08 Cristina Calcagno , Mario Coppo , Ferruccio Damiani , Maurizio Drocco , Eva Sciacca , Salvatore Spinella , Angelo Troina

The shape of a cell influences and it is influenced by interactions with its neighbouring partners. Here, we introduce a coarse-grained model of non-reciprocal interactions between single-cell organisms to study emergent morphologies during…

Soft Condensed Matter · Physics 2025-06-17 Maitane Muñoz-Basagoiti , Michael Wassermair , Miguel Amaral , Buzz Baum , Anđela Šarić

Deviations from the perfect atomic arrangements in crystals play an important role in affecting their properties. Similarly, diffusion of such deviations is behind many microstructural changes in solids. However, observation of point defect…

Materials Science · Physics 2014-07-28 Jani Kotakoski , Clemens Mangler , Jannik C. Meyer

We describe a simple mechanical system that involves Spontaneous Symmetry Breaking. The system consists of two beads constrained to slide along a hoop and attached each other through a spring. When the hoop rotates about a fixed axis, the…

Physics Education · Physics 2007-05-23 Fredy Ochoa , Jorge Clavijo

In graphene growth, island symmetry can become lower than the intrinsic symmetries of both graphene and the substrate. First-principles calculations and Monte Carlo modeling explain the shapes observed in our experiments and earlier studies…

Materials Science · Physics 2015-03-25 Vasilii I. Artyukhov , Yufeng Hao , Rodney S. Ruoff , Boris I. Yakobson

Plants are a paradigm for active shape control in response to stimuli. For instance, it is well-known that a tilted plant will eventually straighten vertically, demonstrating the influence of both an external stimulus, gravity, and an…

Biological Physics · Physics 2025-09-09 Hadrien Oliveri , Derek E. Moulton , Heather A. Harrington , Alain Goriely
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