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We propose to model the dynamics of metabolic networks from a systems biology point of view by four dynamical structure elements: potential function, transverse matrix, degradation matrix, and stochastic force. These four elements are…

Molecular Networks · Quantitative Biology 2007-05-23 P. Ao

We show that a neural network originally designed for language processing can learn the dynamical rules of a stochastic system by observation of a single dynamical trajectory of the system, and can accurately predict its emergent behavior…

Statistical Mechanics · Physics 2022-02-18 Corneel Casert , Isaac Tamblyn , Stephen Whitelam

This paper proposes a stochastic block model with dynamics where the population grows using preferential attachment. Nodes with higher weighted degree are more likely to recruit new nodes, and nodes always recruit nodes from their own…

Social and Information Networks · Computer Science 2024-01-15 Simina Brânzei , Nithish Kumar , Gireeja Ranade

Here we present the entropic dynamics formalism for networks. That is, a framework for the dynamics of graphs meant to represent a network derived from the principle of maximum entropy and the rate of transition is obtained taking into…

Physics and Society · Physics 2021-04-29 Felipe Xavier Costa , Pedro Pessoa

Understanding what types of phenomena lead to discontinuous phase transitions in the connectivity of random networks is an outstanding challenge. Here we show that a simple stochastic model of graph evolution leads to a discontinuous…

Disordered Systems and Neural Networks · Physics 2015-05-28 Wei Chen , Zhiming Zheng , Raissa M. D'Souza

In several real-world networks like the Internet, WWW etc., the number of links grow in time in a non-linear fashion. We consider growing networks in which the number of outgoing links is a non-linear function of time but new links between…

Statistical Mechanics · Physics 2009-11-10 Parongama Sen

A novel model for dynamical traps in intermittent human control is proposed. It describes probabilistic, step-wise transitions between two modes of a subject's behavior - active and passive phases in controlling an object's dynamics - using…

Adaptation and Self-Organizing Systems · Physics 2025-03-04 Vasily Lubashevskiy , Ihor Lubashevsky , Namik Gusein-zade

We study complex networks of stochastic two-state units. Our aim is to model discrete stochastic excitable dynamics with a rest and an excited state. Both states are assumed to possess different waiting time distributions. The rest state is…

Physics and Society · Physics 2016-12-02 Simon Christ , Bernard Sonnenschein , Lutz Schimansky-Geier

Transition points mark qualitative changes in the macroscopic properties of large complex systems. Explosive transitions, exhibiting properties of both continuous and discontinuous phase transitions, have recently been uncovered in network…

Physics and Society · Physics 2021-06-01 Nora Molkenthin , Malte Schröder , Marc Timme

The majority of dynamical studies in power systems focus on the high voltage transmission grids where models consider large generators interacting with crude aggregations of individual small loads. However, new phenomena have been observed…

Physics and Society · Physics 2015-06-12 Charlie Duclut , Scott Backhaus , Michael Chertkov

We define a dynamic model of random networks, where new vertices are connected to old ones with a probability proportional to a sublinear function of their degree. We first give a strong limit law for the empirical degree distribution, and…

Probability · Mathematics 2008-07-31 Steffen Dereich , Peter Morters

This thesis investigates critical phenomena and equilibrium states in various stochastic models through three interconnected studies. In the first chapter, we analyze the Activated Random Walk model on a one-dimensional ring in the…

Probability · Mathematics 2024-12-24 Célio Terra

It is well-known that the fundamental diagram in a realistic traffic system is featured by capacity drop. From a mesoscopic approach, we demonstrate that such a phenomenon is linked to the unique properties of stochastic noise, which, when…

Applications · Statistics 2025-03-21 Mariana Pereira de Melo , Leon Alexander Valencia , Wei-Liang Qian

We derive asymptotic properties for a stochastic dynamic network model in a stochastic dynamic population. In the model, nodes give birth to new nodes until they die, each node being equipped with a social index given at birth. During the…

Probability · Mathematics 2019-07-10 Tom Britton , Mathias Lindholm , Tatyana Turova

Stochastic dynamics is generated by a matrix of transition probabilities. Certain eigenvectors of this matrix provide observables, and when these are plotted in the appropriate multi-dimensional space the phases (in the sense of phase…

Statistical Mechanics · Physics 2007-11-08 B. Gaveau , L. S. Schulman

We investigate theoretically the stochastic dynamics of Resonance Electronic Energy Transfer (RET), in a bi-dimensional overexcited ensemble of donor and acceptor molecules. We find that, after initial optical excitation of all the donors,…

Mesoscale and Nanoscale Physics · Physics 2023-11-27 R. Avriller , A. Marché , G. Jonusauskas

We analyse biased ensembles of trajectories for the random-field Ising model on a fully-connected lattice, which is described exactly by mean-field theory. By coupling the activity of the system to a dynamical biasing field, we find a range…

Statistical Mechanics · Physics 2021-10-27 Jules Guioth , Robert L. Jack

Typically, contagion strength is modeled by a transmission rate $\lambda$, whereby all nodes in a network are treated uniformly in a mean-field approximation. However, local agents react differently to the same contagion based on their…

Physics and Society · Physics 2014-01-28 Pouya Manshour , Afshin Montakhab

The field of complex networks studies a wide variety of interacting systems by representing them as networks. To understand their properties and mutual relations, the randomisation of network connections is a commonly used tool. However,…

Statistical Mechanics · Physics 2024-10-18 Noam Abadi , Franco Ruzzenenti

We demonstrate that absorbing phase transitions in one dimension may be induced by the dynamics of a single site. As an example we consider a one-dimensional model of diffusing particles, where a single site at the boundary evolves…

Statistical Mechanics · Physics 2008-04-23 A. C. Barato , H. Hinrichsen