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Motivation: Deep learning architectures have recently demonstrated their power in predicting DNA- and RNA-binding specificities. Existing methods fall into three classes: Some are based on Convolutional Neural Networks (CNNs), others use…

Machine Learning · Computer Science 2019-01-31 Ameni Trabelsi , Mohamed Chaabane , Asa Ben Hur

Image classification has become one of the main tasks in the field of computer vision technologies. In this context, a recent algorithm called CapsNet that implements an approach based on activity vectors and dynamic routing between…

Computer Vision and Pattern Recognition · Computer Science 2018-05-30 Rinat Mukhometzianov , Juan Carrillo

Systematic relations between multiple objects that occur in various fields can be represented as networks. Real-world networks typically exhibit complex topologies whose structural properties are key factors in characterizing and further…

Physics and Society · Physics 2021-04-09 Yoshihisa Tanaka , Ryosuke Kojima , Shoichi Ishida , Fumiyoshi Yamashita , Yasushi Okuno

Pulsar searching is essential for the scientific research in the field of physics and astrophysics. As the development of the radio telescope, the exploding volume and it growth speed of candidates growth have brought about several…

Instrumentation and Methods for Astrophysics · Physics 2023-12-27 Qingguo Zeng , Xiangru Li , Haitao Lin

Capsule networks (CapsNets) aim to parse images into a hierarchy of objects, parts, and their relations using a two-step process involving part-whole transformation and hierarchical component routing. However, this hierarchical relationship…

Computer Vision and Pattern Recognition · Computer Science 2023-10-25 Pourya Shamsolmoali , Masoumeh Zareapoor , Swagatam Das , Eric Granger , Salvador Garcia

The computational prediction of a protein structure from its sequence generally relies on a method to assess the quality of protein models. Most assessment methods rank candidate models using heavily engineered structural features, defined…

Biomolecules · Quantitative Biology 2018-11-26 Georgy Derevyanko , Sergei Grudinin , Yoshua Bengio , Guillaume Lamoureux

Cells integrate signals and make decisions about their future state in short amounts of time. A lot of theoretical effort has gone into asking how to best design gene regulatory circuits that fulfill a given function, yet little is known…

Molecular Networks · Quantitative Biology 2025-10-08 Tarek Tohme , Massimo Vergassola , Thierry Mora , Aleksandra M. Walczak

Background: Accurate segmentation of microscopic structures such as bio-artificial capsules in microscopy imaging is a prerequisite to the computer-aided understanding of important biomechanical phenomenons. State-of-the-art segmentation…

Computer Vision and Pattern Recognition · Computer Science 2023-01-10 Arnaud Deleruyelle , Cristian Versari , John Klein

Learning self-supervised representations that are invariant and equivariant to transformations is crucial for advancing beyond traditional visual classification tasks. However, many methods rely on predictor architectures to encode…

Computer Vision and Pattern Recognition · Computer Science 2025-06-12 Athinoulla Konstantinou , Georgios Leontidis , Mamatha Thota , Aiden Durrant

Circular RNAs (circRNAs) are important components of the non-coding RNA regulatory network. Previous circRNA identification primarily relies on high-throughput RNA sequencing (RNA-seq) data combined with alignment-based algorithms that…

Machine Learning · Computer Science 2025-07-14 Tianyou Jiang

Capsule network is the most recent exciting advancement in the deep learning field and represents positional information by stacking features into vectors. The dynamic routing algorithm is used in the capsule network, however, there are…

Machine Learning · Computer Science 2019-11-20 Qiang Ren , Shaohua Shang , Lianghua He

Recent advancements in signal processing and machine learning domains have resulted in an extensive surge of interest in deep learning models due to their unprecedented performance and high accuracy for different and challenging problems of…

Computer Vision and Pattern Recognition · Computer Science 2018-03-01 Atefeh Shahroudnejad , Arash Mohammadi , Konstantinos N. Plataniotis

Radio propagation modeling and prediction is fundamental for modern cellular network planning and optimization. Conventional radio propagation models fall into two categories. Empirical models, based on coarse statistics, are simple and…

Information Theory · Computer Science 2021-10-06 Xin Zhang , Xiujun Shu , Bingwen Zhang , Jie Ren , Lizhou Zhou , Xin Chen

Previous studies have shown the great potential of capsule networks for the spatial contextual feature extraction from {hyperspectral images (HSIs)}. However, the sampling locations of the convolutional kernels of capsules are fixed and…

Computer Vision and Pattern Recognition · Computer Science 2021-04-27 Jinping Wang , Xiaojun Tan , Jianhuang Lai , Jun Li , Canqun Xiang

Capsule Networks, as alternatives to Convolutional Neural Networks, have been proposed to recognize objects from images. The current literature demonstrates many advantages of CapsNets over CNNs. However, how to create explanations for…

Computer Vision and Pattern Recognition · Computer Science 2021-03-09 Jindong Gu , Volker Tresp

Capsule Network (CapsNet) is among the promising classifiers and a possible successor of the classifiers built based on Convolutional Neural Network (CNN). CapsNet is more accurate than CNNs in detecting images with overlapping categories…

Computer Vision and Pattern Recognition · Computer Science 2025-12-02 Pouya Shiri , Amirali Baniasadi

Convolutional neural networks (CNNs) are crucial for computer vision tasks on resource-constrained devices. Quantization effectively compresses these models, reducing storage size and energy cost. However, in modern depthwise-separable…

Computer Vision and Pattern Recognition · Computer Science 2025-08-07 Lukas Meiner , Jens Mehnert , Alexandru Paul Condurache

We introduce and train distributed neural architectures (DNA) in vision and language domains. DNAs are initialized with a proto-architecture that consists of (transformer, MLP, attention, etc.) modules and routers. Any token (or patch) can…

Machine Learning · Computer Science 2025-06-30 Aditya Cowsik , Tianyu He , Andrey Gromov

Recent genomic and bioinformatic advances have motivated the development of numerous random network models purporting to describe graphs of biological, technological, and sociological origin. The success of a model has been evaluated by how…

Molecular Networks · Quantitative Biology 2007-05-23 Manuel Middendorf , Etay Ziv , Carter Adams , Jen Hom , Robin Koytcheff , Chaya Levovitz , Gregory Woods , Linda Chen , Chris Wiggins

Much of the recent improvement in neural networks for computer vision has resulted from discovery of new networks architectures. Most prior work has used the performance of candidate models following limited training to automatically guide…

Computer Vision and Pattern Recognition · Computer Science 2019-09-09 Pouya Bashivan , Mark Tensen , James J DiCarlo
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