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We introduce an unsupervised deep manifold learning algorithm for motion-compensated dynamic MRI. We assume that the motion fields in a free-breathing lung MRI dataset live on a manifold. The motion field at each time instant is modeled as…

Image and Video Processing · Electrical Eng. & Systems 2021-11-23 Qing Zou , Luis A. Torres , Sean B. Fain , Mathews Jacob

We introduce a novel generative smoothness regularization on manifolds (SToRM) model for the recovery of dynamic image data from highly undersampled measurements. The proposed generative framework represents the image time series as a…

Image and Video Processing · Electrical Eng. & Systems 2021-02-01 Qing Zou , Abdul Haseeb Ahmed , Prashant Nagpal , Stanley Kruger , Mathews Jacob

We introduce a generative smoothness regularization on manifolds (SToRM) model for the recovery of dynamic image data from highly undersampled measurements. The model assumes that the images in the dataset are non-linear mappings of…

Image and Video Processing · Electrical Eng. & Systems 2021-03-12 Qing Zou , Abdul Haseeb Ahmed , Prashant Nagpal , Stanley Kruger , Mathews Jacob

We introduce an unsupervised motion-compensated image reconstruction algorithm for free-breathing and ungated 3D cardiac magnetic resonance imaging (MRI). We express the image volume corresponding to each specific motion phase as the…

Computer Vision and Pattern Recognition · Computer Science 2025-06-03 Joseph Kettelkamp , Ludovica Romanin , Sarv Priya , Mathews Jacob

Cardiac magnetic resonance (CMR) imaging is widely used to characterize cardiac morphology and function. To accelerate CMR imaging, various methods have been proposed to recover high-quality spatiotemporal CMR images from highly…

Image and Video Processing · Electrical Eng. & Systems 2025-11-18 Xuanyu Tian , Lixuan Chen , Qing Wu , Xiao Wang , Jie Feng , Yuyao Zhang , Hongjiang Wei

This study presents an unsupervised, motion-resolved reconstruction framework for high-resolution, free-breathing pulmonary magnetic resonance imaging (MRI), utilizing a three-dimensional Gaussian representation (3DGS). The proposed method…

Image and Video Processing · Electrical Eng. & Systems 2026-04-02 Tengya Peng , Ruyi Zha , Qing Zou

Measuring the dynamics and mechanical properties of muscles and joints is important to understand the (patho)physiology of muscles. However, acquiring dynamic time-resolved MRI data is challenging. We have previously developed…

Four-dimensional MRI (4D-MRI) is an promising technique for capturing respiratory-induced motion in radiation therapy planning and delivery. Conventional 4D reconstruction methods, which typically rely on phase binning or separate template…

Computer Vision and Pattern Recognition · Computer Science 2025-09-24 Xinyang Wu , Muheng Li , Xia Li , Orso Pusterla , Sairos Safai , Philippe C. Cattin , Antony J. Lomax , Ye Zhang

We propose an unsupervised deep learning algorithm for the motion-compensated reconstruction of 5D cardiac MRI data from 3D radial acquisitions. Ungated free-breathing 5D MRI simplifies the scan planning, improves patient comfort, and…

Image and Video Processing · Electrical Eng. & Systems 2023-09-12 Joseph Kettelkamp , Ludovica Romanin , Davide Piccini , Sarv Priya , Mathews Jacob

We propose a deep self-learning algorithm to learn the manifold structure of free-breathing and ungated cardiac data and to recover the cardiac CINE MRI from highly undersampled measurements. Our method learns the manifold structure in the…

Image and Video Processing · Electrical Eng. & Systems 2019-11-07 Abdul Haseeb Ahmed , Hemant Aggarwal , Prashant Nagpal , Mathews Jacob

Dynamic volumetric MRI provides valuable information on in vivo motion and biomechanics, with applications spanning cardiac, musculoskeletal, or pulmonary imaging, amongst others. Developing reconstruction methods for time-resolved…

We introduce a kernel low-rank algorithm to recover free-breathing and ungated dynamic MRI from spiral acquisitions without explicit k-space navigators. It is often challenging for low-rank methods to recover free-breathing and ungated…

Image and Video Processing · Electrical Eng. & Systems 2021-03-09 Abdul Haseeb Ahmed , Ruixi Zhou , Yang Yang , Prashant Nagpal , Michael Salerno , Mathews Jacob

Motion-resolved reconstruction for abdominal magnetic resonance imaging (MRI) remains a challenge due to the trade-off between residual motion blurring caused by discretized motion states and undersampling artefacts. In this work, we…

We propose a novel unsupervised deep-learning-based algorithm for dynamic magnetic resonance imaging (MRI) reconstruction. Dynamic MRI requires rapid data acquisition for the study of moving organs such as the heart. Existing reconstruction…

Image and Video Processing · Electrical Eng. & Systems 2021-01-26 Jaejun Yoo , Kyong Hwan Jin , Harshit Gupta , Jerome Yerly , Matthias Stuber , Michael Unser

Based on a 3D pre-treatment magnetic resonance (MR) scan, we developed DREME-MR to jointly reconstruct the reference patient anatomy and a data-driven, patient-specific cardiorespiratory motion model. Via a motion encoder simultaneously…

Medical Physics · Physics 2025-07-04 Hua-Chieh Shao , Xiaoxue Qian , Guoping Xu , Can Wu , Ricardo Otazo , Jie Deng , You Zhang

Estimation of internal body motion with high spatio-temporal resolution can greatly benefit MR-guided radiotherapy/interventions and cardiac imaging, but remains a challenge to date. In image-based methods, where motion is indirectly…

To develop an efficient motion-compensated reconstruction technique for free-breathing cardiac magnetic resonance imaging (MRI) that allows high-quality images to be reconstructed from multiple undersampled single-shot acquisitions. The…

Computer Vision and Pattern Recognition · Computer Science 2016-11-16 Aurelien Bustin , Anne Menini , Martin A. Janich , Darius Burschka , Jacques Felblinger , Anja C. S. Brau , Freddy Odille

This work aims to generate realistic anatomical deformations from static patient scans. Specifically, we present a method to generate these deformations/augmentations via deep learning driven respiratory motion simulation that provides the…

Computer Vision and Pattern Recognition · Computer Science 2023-01-30 Donghoon Lee , Ellen Yorke , Masoud Zarepisheh , Saad Nadeem , Yu-Chi Hu

Dynamic MRI is a technique of acquiring a series of images continuously to follow the physiological changes over time. However, such fast imaging results in low resolution images. In this work, abdominal deformation model computed from…

Image and Video Processing · Electrical Eng. & Systems 2019-10-11 Chompunuch Sarasaen , Soumick Chatterjee , Mario Breitkopf , Domenico Iuso , Georg Rose , Oliver Speck

Purpose: To improve upon Extreme MRI, a recently proposed method by Ong Et al. for reconstructing high spatiotemporal resolution, 3D non-Cartesian acquisitions by incorporating motion compensation into these reconstructions using an…

Medical Physics · Physics 2022-05-03 Zachary Miller , Luis Torres , Sean Fain , Kevin Johnson
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