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The modeling of bio-molecular system across molecular scales remains a central challenge in scientific research. Large language models (LLMs) are increasingly applied to bio-molecular discovery, yet systematic evaluation across multi-scale…

Machine Learning · Computer Science 2026-04-07 Yaxin Xu , Yue Zhou , Tianyu Zhao , Fengwei An , Zhixiang Ren

The increasing complexity of deep learning architectures is resulting in training time requiring weeks or even months. This slow training is due in part to vanishing gradients, in which the gradients used by back-propagation are extremely…

Computer Vision and Pattern Recognition · Computer Science 2015-10-16 Bharat Singh , Soham De , Yangmuzi Zhang , Thomas Goldstein , Gavin Taylor

Going deeper and wider in neural architectures improves the accuracy, while the limited GPU DRAM places an undesired restriction on the network design domain. Deep Learning (DL) practitioners either need change to less desired network…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-01-17 Linnan Wang , Jinmian Ye , Yiyang Zhao , Wei Wu , Ang Li , Shuaiwen Leon Song , Zenglin Xu , Tim Kraska

Many machine learning tasks can benefit from external knowledge. Large knowledge graphs store such knowledge, and embedding methods can be used to distill it into ready-to-use vector representations for downstream applications. For this…

Machine Learning · Computer Science 2026-03-18 Félix Lefebvre , Gaël Varoquaux

A new scalable parallel math library, dMath, is presented in this paper that demonstrates leading scaling when using intranode, or internode, hybrid-parallelism for deep-learning. dMath provides easy-to-use distributed base primitives and a…

Neural and Evolutionary Computing · Computer Science 2016-04-07 Steven Eliuk , Cameron Upright , Anthony Skjellum

Deep learning is pervasive in our daily life, including self-driving cars, virtual assistants, social network services, healthcare services, face recognition, etc. However, deep neural networks demand substantial compute resources during…

Graph neural network (GNN) architectures have emerged as promising force field models, exhibiting high accuracy in predicting complex energies and forces based on atomic identities and Cartesian coordinates. To expand the applicability of…

Chemical Physics · Physics 2026-01-12 Justin Airas , Bin Zhang

Graph neural networks (GNN) have shown promising results for several domains such as materials science, chemistry, and the social sciences. GNN models often contain millions of parameters, and like other neural network (NN) models, are…

Machine Learning · Computer Science 2026-04-21 Daniel T. Speckhard , Tim Bechtel , Sebastian Kehl , Jonathan Godwin , Claudia Draxl

Accurate and efficient prediction of polymer properties is of key importance for polymer design. Traditional experimental tools and density function theory (DFT)-based simulations for polymer property evaluation, are both expensive and…

Materials Science · Physics 2024-10-08 Cong Shen , Yipeng Zhang , Fei Han , Kelin Xia

Deep learning is a technique for machine learning using multi-layer neural networks. It has been used for image synthesis and image recognition, but in recent years, it has also been used for various social detection and social labeling. In…

Computer Vision and Pattern Recognition · Computer Science 2021-09-14 Yasuko Kawahata

In recent years, Graph Neural Networks (GNNs) have achieved remarkable success in many graph mining tasks. However, scaling them to large graphs is challenging due to the high computational and storage costs of repeated feature propagation…

Machine Learning · Computer Science 2025-04-11 Yuxuan Liang , Wentao Zhang , Zeang Sheng , Ling Yang , Quanqing Xu , Jiawei Jiang , Yunhai Tong , Bin Cui

Climate models play a critical role in understanding and projecting climate change. Due to their complexity, their horizontal resolution of about 40-100 km remains too coarse to resolve processes such as clouds and convection, which need to…

Machine Learning · Computer Science 2025-03-18 Birgit Kühbacher , Fernando Iglesias-Suarez , Niki Kilbertus , Veronika Eyring

The proliferation of extensive neural network architectures, particularly deep learning models, presents a challenge in terms of resource-intensive training. GPU memory constraints have become a notable bottleneck in training such sizable…

Machine Learning · Computer Science 2025-02-07 Cevat Volkan Karadağ , Nezih Topaloğlu

Large Language Models (LLMs) have demonstrated strong capabilities in various natural language processing tasks; however, their application to graph-related problems remains limited, primarily due to scalability constraints and the absence…

Machine Learning · Computer Science 2025-05-08 Hyun Lee , Chris Yi , Maminur Islam , B. D. S. Aritra

Dramatic increases in the capabilities of neural network models in recent years are driven by scaling model size, training data, and corresponding computational resources. To develop the exceedingly large networks required in modern…

Machine Learning · Computer Science 2025-04-15 Jared Fernandez , Luca Wehrstedt , Leonid Shamis , Mostafa Elhoushi , Kalyan Saladi , Yonatan Bisk , Emma Strubell , Jacob Kahn

Large-scale graph training is a notoriously challenging problem for graph neural networks (GNNs). Due to the nature of evolving graph structures into the training process, vanilla GNNs usually fail to scale up, limited by the GPU memory…

Machine Learning · Computer Science 2023-03-02 Keyu Duan , Zirui Liu , Peihao Wang , Wenqing Zheng , Kaixiong Zhou , Tianlong Chen , Xia Hu , Zhangyang Wang

A curriculum is a planned sequence of learning materials and an effective one can make learning efficient and effective for both humans and machines. Recent studies developed effective data-driven curriculum learning approaches for training…

Machine Learning · Computer Science 2023-07-19 Nidhi Vakil , Hadi Amiri

This work presents the use of graph learning for the prediction of multi-step experimental outcomes for applications across experimental research, including material science, chemistry, and biology. The viability of geometric learning for…

Machine Learning · Computer Science 2024-08-13 Amanda A. Volk , Robert W. Epps , Jeffrey G. Ethier , Luke A. Baldwin

Modern machine learning models are typically trained using Stochastic Gradient Descent (SGD) on massively parallel computing resources such as GPUs. Increasing mini-batch size is a simple and direct way to utilize the parallel computing…

Machine Learning · Statistics 2019-03-05 Siyuan Ma , Mikhail Belkin

Machine learning (ML) offers considerable promise for the design of new molecules and materials. In real-world applications, the design problem is often domain-specific, and suffers from insufficient data, particularly labeled data, for ML…

Chemical Physics · Physics 2025-02-04 Ming Han , Ge Sun , Juan J. de Pablo
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