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Off-the-shelf biomedical embeddings obtained from the recently released various pre-trained language models (such as BERT, XLNET) have demonstrated state-of-the-art results (in terms of accuracy) for the various natural language…

Computation and Language · Computer Science 2020-12-22 Ishani Mondal

Text mining the relations between chemicals and proteins is an increasingly important task. The CHEMPROT track at BioCreative VI aims to promote the development and evaluation of systems that can automatically detect the chemical-protein…

Computation and Language · Computer Science 2018-02-06 Yifan Peng , Anthony Rios , Ramakanth Kavuluru , Zhiyong Lu

Relation prediction in knowledge graphs is dominated by embedding based methods which mainly focus on the transductive setting. Unfortunately, they are not able to handle inductive learning where unseen entities and relations are present…

Computation and Language · Computer Science 2021-03-15 Hanwen Zha , Zhiyu Chen , Xifeng Yan

Existing research studies on cross-sentence relation extraction in long-form multi-party conversations aim to improve relation extraction without considering the explainability of such methods. This work addresses that gap by focusing on…

Computation and Language · Computer Science 2022-10-20 Alon Albalak , Varun Embar , Yi-Lin Tuan , Lise Getoor , William Yang Wang

Biological relation networks contain rich information for understanding the biological mechanisms behind the relationship of entities such as genes, proteins, diseases, and chemicals. The vast growth of biomedical literature poses…

Computation and Language · Computer Science 2025-01-27 Po-Ting Lai , Chih-Hsuan Wei , Shubo Tian , Robert Leaman , Zhiyong Lu

We introduce SpERT, an attention model for span-based joint entity and relation extraction. Our key contribution is a light-weight reasoning on BERT embeddings, which features entity recognition and filtering, as well as relation…

Computation and Language · Computer Science 2021-06-30 Markus Eberts , Adrian Ulges

Adding linguistic information (syntax or semantics) to neural machine translation (NMT) has mostly focused on using point estimates from pre-trained models. Directly using the capacity of massive pre-trained contextual word embedding models…

Computation and Language · Computer Science 2021-04-08 Hassan S. Shavarani , Anoop Sarkar

In this paper we address the challenge of extracting scientific references from patents. We approach the problem as a sequence labelling task and investigate the merits of BERT models to the extraction of these long sequences. References in…

Information Retrieval · Computer Science 2021-03-11 Ken Voskuil , Suzan Verberne

Scientific literature contains a considerable amount of information that provides an excellent opportunity for developing text mining methods to extract biomedical relationships. An important type of information is the relationship between…

Computation and Language · Computer Science 2023-08-08 Mohammad Dehghani , Behrouz Bokharaeian , Zahra Yazdanparast

Recent studies on domain-specific BERT models show that effectiveness on downstream tasks can be improved when models are pretrained on in-domain data. Often, the pretraining data used in these models are selected based on their subject…

Computation and Language · Computer Science 2020-10-06 Xiang Dai , Sarvnaz Karimi , Ben Hachey , Cecile Paris

The goal of dialogue relation extraction (DRE) is to identify the relation between two entities in a given dialogue. During conversations, speakers may expose their relations to certain entities by explicit or implicit clues, such evidences…

Computation and Language · Computer Science 2022-07-26 Po-Wei Lin , Shang-Yu Su , Yun-Nung Chen

Current language models are usually trained using a self-supervised scheme, where the main focus is learning representations at the word or sentence level. However, there has been limited progress in generating useful discourse-level…

Computation and Language · Computer Science 2021-09-13 Vladimir Araujo , Andrés Villa , Marcelo Mendoza , Marie-Francine Moens , Alvaro Soto

Relation Extraction (RE) is one of the fundamental tasks in Information Extraction and Natural Language Processing. Dependency trees have been shown to be a very useful source of information for this task. The current deep learning models…

Computation and Language · Computer Science 2019-07-09 Amir Pouran Ben Veyseh , Thien Huu Nguyen , Dejing Dou

Relation extraction is a fundamental problem in natural language processing. Most existing models are defined for relation extraction in the general domain. However, their performance on specific domains (e.g., biomedicine) is yet unclear.…

Computation and Language · Computer Science 2021-12-14 Yongkang Li

Supervised models trained to predict properties from representations have been achieving high accuracy on a variety of tasks. For instance, the BERT family seems to work exceptionally well on the downstream task from NER tagging to the…

Computation and Language · Computer Science 2020-12-22 Tejas Vaidhya , Ayush Kaushal

Relation classification is an important NLP task to extract relations between entities. The state-of-the-art methods for relation classification are primarily based on Convolutional or Recurrent Neural Networks. Recently, the pre-trained…

Computation and Language · Computer Science 2019-05-22 Shanchan Wu , Yifan He

While large language models like BERT demonstrate strong empirical performance on semantic tasks, whether this reflects true conceptual competence or surface-level statistical association remains unclear. I investigate whether BERT encodes…

Computation and Language · Computer Science 2025-06-16 Cole Gawin

To achieve deep natural language understanding, syntactic constituent parsing plays a crucial role and is widely required by many artificial intelligence systems for processing both text and speech. A recent approach involves using standard…

Computation and Language · Computer Science 2026-05-14 Daniel Fernández-González , Cristina Outeiriño Cid

Computational chemistry develops fast in recent years due to the rapid growth and breakthroughs in AI. Thanks for the progress in natural language processing, researchers can extract more fine-grained knowledge in publications to stimulate…

Computation and Language · Computer Science 2019-05-15 Na Pang , Li Qian , Weimin Lyu , Jin-Dong Yang

Relation extraction that is the task of predicting semantic relation type between entities in a sentence or document is an important task in natural language processing. Although there are many researches and datasets for English, Persian…

Computation and Language · Computer Science 2022-03-30 Moein Salimi Sartakhti , Romina Etezadi , Mehrnoush Shamsfard