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Graph foundation models have demonstrated remarkable adaptability across diverse downstream tasks through large-scale pretraining on graphs. However, existing implementations of the backbone model, graph transformers, are typically limited…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-04-21 Jun-Liang Lin , Kamesh Madduri , Mahmut Taylan Kandemir

Optimizing deep learning models is generally performed in two steps: (i) high-level graph optimizations such as kernel fusion and (ii) low level kernel optimizations such as those found in vendor libraries. This approach often leaves…

Machine Learning · Computer Science 2021-03-08 Pratik Fegade , Tianqi Chen , Phillip B. Gibbons , Todd C. Mowry

We present a distributed-memory library for computations with dense structured matrices. A matrix is considered structured if its off-diagonal blocks can be approximated by a rank-deficient matrix with low numerical rank. Here, we use…

Mathematical Software · Computer Science 2015-06-29 François-Henry Rouet , Xiaoye S. Li , Pieter Ghysels , Artem Napov

We introduce a new resource-efficient scheme for fault-tolerant quantum computation known as `macroscale multiplexing' (or simply `Macromux'), that utilizes scalable postselection to significantly improve the threshold of a given…

We propose a novel approach to compute the MAXCUT in attributed graphs, i.e., graphs with features associated with nodes and edges. Our approach works well on any kind of graph topology and can find solutions that jointly optimize the…

Machine Learning · Computer Science 2025-02-03 Carlo Abate , Filippo Maria Bianchi

Nonnegative matrix factorization (NMF) is a powerful technique for dimension reduction, extracting latent factors and learning part-based representation. For large datasets, NMF performance depends on some major issues: fast algorithms,…

Optimization and Control · Mathematics 2015-07-01 Duy-Khuong Nguyen , Tu-Bao Ho

Directed graphs are widely used to model data flow and execution dependencies in streaming applications. This enables the utilization of graph partitioning algorithms for the problem of parallelizing computation for multiprocessor…

Data Structures and Algorithms · Computer Science 2017-09-26 Orlando Moreira , Merten Popp , Christian Schulz

The procedure of Least Square-Errors curve fitting is extensively used in many computer applications for fitting a polynomial curve of a given degree to approximate a set of data. Although various methodologies exist to carry out curve…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-12-29 Poorna Banerjee Dasgupta

We present a matrix-factorization algorithm that scales to input matrices with both huge number of rows and columns. Learned factors may be sparse or dense and/or non-negative, which makes our algorithm suitable for dictionary learning,…

Machine Learning · Statistics 2017-11-15 Arthur Mensch , Julien Mairal , Bertrand Thirion , Gael Varoquaux

We present an open-source CUDA-based package that consists of a compilation of exponential integrators where the action of the matrix exponential or the $\varphi_l$ functions on a vector is approximated using the method of polynomial…

Numerical Analysis · Mathematics 2024-10-23 Pranab J Deka , Alexander Moriggl , Lukas Einkemmer

We investigate a parallelization strategy for dense matrix factorization (DMF) algorithms, using OpenMP, that departs from the legacy (or conventional) solution, which simply extracts concurrency from a multithreaded version of BLAS. This…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-04-20 Sandra Catalán , Adrián Castelló , Francisco D. Igual , Rafael Rodríguez-Sánchez , Enrique S. Quintana-Ortí

AcceleratedKernels.jl is introduced as a backend-agnostic library for parallel computing in Julia, natively targeting NVIDIA, AMD, Intel, and Apple accelerators via a unique transpilation architecture. Written in a unified, compact…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-23 Andrei-Leonard Nicusan , Dominik Werner , Simon Branford , Simon Hartley , Andrew J. Morris , Kit Windows-Yule

The in-memory graph layout or organization has a considerable impact on the time and energy efficiency of distributed memory graph computations. It affects memory locality, inter-task load balance, communication time, and overall memory…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-01-04 George M Slota , Sivasankaran Rajamanickam , Kamesh Madduri

In this paper we tackle the fragmentation problem for highly distributed databases. In such an environment, a suitable fragmentation strategy may provide scalability and availability by minimizing distributed transactions. We propose an…

Databases · Computer Science 2013-04-25 Rebeca Schroeder , Ronaldo Santos Mello , Carmem Satie Hara

Matrix multiplication is a foundational operation in scientific computing and machine learning, yet its computational complexity makes it a significant bottleneck for large-scale applications. The shift to parallel architectures, primarily…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-30 Mufakir Qamar Ansari , Mudabir Qamar Ansari

In this paper, we propose a general framework to accelerate significantly the algorithms for nonnegative matrix factorization (NMF). This framework is inspired from the extrapolation scheme used to accelerate gradient methods in convex…

Numerical Analysis · Computer Science 2020-01-14 Andersen Man Shun Ang , Nicolas Gillis

We consider factoring low-rank tensors in the presence of outlying slabs. This problem is important in practice, because data collected in many real-world applications, such as speech, fluorescence, and some social network data, fit this…

Machine Learning · Statistics 2023-07-19 Xiao Fu , Kejun Huang , Wing-Kin Ma , Nicholas D. Sidiropoulos , Rasmus Bro

Multiresolution Matrix Factorization (MMF) was recently introduced as a method for finding multiscale structure and defining wavelets on graphs/matrices. In this paper we derive pMMF, a parallel algorithm for computing the MMF…

Numerical Analysis · Computer Science 2015-07-17 Risi Kondor , Nedelina Teneva , Pramod K. Mudrakarta

Dense matrix multiply (MM) serves as one of the most heavily used kernels in deep learning applications. To cope with the high computation demands of these applications, heterogeneous architectures featuring both FPGA and dedicated ASIC…

Suffix Array (SA) is a cardinal data structure in many pattern matching applications, including data compression, plagiarism detection and sequence alignment. However, as the volumes of data increase abruptly, the construction of SA is not…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-05-16 Hsiang-Huang Wu , Chien-Min Wang , Hsuan-Chi Kuo , Wei-Chun Chung , Jan-Ming Ho