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Drug-drug interaction (DDI) is a major cause of morbidity and mortality and a subject of intense scientific interest. Biomedical literature mining can aid DDI research by extracting evidence for large numbers of potential interactions from…

Machine Learning · Statistics 2015-05-19 Artemy Kolchinsky , Anália Lourenço , Heng-Yi Wu , Lang Li , Luis M. Rocha

Side effects of prescribed medications are a common occurrence. Electronic healthcare databases present the opportunity to identify new side effects efficiently but currently the methods are limited due to confounding (i.e. when an…

Databases · Computer Science 2016-11-17 Jenna M. Reps , Uwe Aickelin , Jiangang Ma , Yanchun Zhang

Table Detection has become a fundamental task for visually rich document understanding with the surging number of electronic documents. However, popular public datasets widely used in related studies have inherent limitations, including…

Information Retrieval · Computer Science 2023-11-09 Bin Xiao , Murat Simsek , Burak Kantarci , Ala Abu Alkheir

The surging amount of biomedical literature & digital clinical records presents a growing need for text mining techniques that can not only identify but also semantically relate entities in unstructured data. In this paper we propose a text…

Computation and Language · Computer Science 2021-12-28 Hasham Ul Haq , Veysel Kocaman , David Talby

Despite the dramatic progress in Large Language Model (LLM) development, LLMs often provide seemingly plausible but not factual information, often referred to as hallucinations. Retrieval-augmented LLMs provide a non-parametric approach to…

Computation and Language · Computer Science 2023-11-09 Sai Munikoti , Anurag Acharya , Sridevi Wagle , Sameera Horawalavithana

Peptides are ubiquitous and important biologically derived molecules, that have been found to self-assemble to form a wide array of structures. Extensive research has explored the impacts of both internal chemical composition and external…

Soft Condensed Matter · Physics 2024-11-11 Zhenze Yang , Sarah K. Yorke , Tuomas P. J. Knowles , Markus J. Buehler

As the bridge between genetic and physiological aspects, animal behaviour analysis is one of the most significant topics in biology and ecological research. However, identifying, tracking and recording animal behaviour are labour intensive…

Computer Vision and Pattern Recognition · Computer Science 2022-06-28 Ziping Jiang , Paul L. Chazot , Richard Jiang

Efficient and accurate extraction of electrical parameters from circuit datasheets and design documents is critical for accelerating circuit design in Electronic Design Automation (EDA). Traditional workflows often rely on engineers…

Hardware Architecture · Computer Science 2024-12-10 Hong Cai Chen , Longchang Wu , Ming Gao , Lingrui Shen , Jiarui Zhong , Yipin Xu

Medical dialogue information extraction is becoming an increasingly significant problem in modern medical care. It is difficult to extract key information from electronic medical records (EMRs) due to their large numbers. Previously,…

Computation and Language · Computer Science 2023-03-14 Xinshi Wang , Daniel Tang

The volume of academic paper submissions and publications is growing at an ever increasing rate. While this flood of research promises progress in various fields, the sheer volume of output inherently increases the amount of noise. We…

Information Retrieval · Computer Science 2020-05-22 Marko Stamenovic , Jeibo Luo

Successful Artificial Intelligence systems often require numerous labeled data to extract information from document images. In this paper, we investigate the problem of improving the performance of Artificial Intelligence systems in…

Information Retrieval · Computer Science 2022-09-27 Bao-Sinh Nguyen , Dung Tien Le , Hieu M. Vu , Tuan Anh D. Nguyen , Minh-Tien Nguyen , Hung Le

A ubiquitous task in processing electronic medical data is the assignment of standardized codes representing diagnoses and/or procedures to free-text documents such as medical reports. This is a difficult natural language processing task…

Document information extraction tasks performed by humans create data consisting of a PDF or document image input, and extracted string outputs. This end-to-end data is naturally consumed and produced when performing the task because it is…

Computation and Language · Computer Science 2021-04-26 Rasmus Berg Palm , Florian Laws , Ole Winther

Drug prescriptions are essential information that must be encoded in electronic medical records. However, much of this information is hidden within free-text reports. This is why the medication extraction task has emerged. To date, most of…

Computation and Language · Computer Science 2021-10-22 Ali Can Kocabiyikoglu , François Portet , Raheel Qader , Jean-Marc Babouchkine

Pool of knowledge available to the mankind depends on the source of learning resources, which can vary from ancient printed documents to present electronic material. The rapid conversion of material available in traditional libraries to…

Computer Vision and Pattern Recognition · Computer Science 2014-12-25 Akmal Jahan Mac , Roshan G Ragel

We address the task of hierarchical multi-label classification (HMC) of scientific documents at an industrial scale, where hundreds of thousands of documents must be classified across thousands of dynamic labels. The rapid growth of…

Artificial Intelligence · Computer Science 2024-12-09 Seyed Amin Tabatabaei , Sarah Fancher , Michael Parsons , Arian Askari

Procedures are an important knowledge component of documents that can be leveraged by cognitive assistants for automation, question-answering or driving a conversation. It is a challenging problem to parse big dense documents like product…

Artificial Intelligence · Computer Science 2020-10-21 Shivali Agarwal , Shubham Atreja , Vikas Agarwal

Distantly supervised (DS) relation extraction (RE) has attracted much attention in the past few years as it can utilize large-scale auto-labeled data. However, its evaluation has long been a problem: previous works either took costly and…

Computation and Language · Computer Science 2021-05-21 Tianyu Gao , Xu Han , Keyue Qiu , Yuzhuo Bai , Zhiyu Xie , Yankai Lin , Zhiyuan Liu , Peng Li , Maosong Sun , Jie Zhou

Social media is becoming an increasingly important source of information to complement traditional pharmacovigilance methods. In order to identify signals of potential adverse drug reactions, it is necessary to first identify medical…

Artificial Intelligence · Computer Science 2015-04-28 Alejandro Metke-Jimenez , Sarvnaz Karimi

Accurate and comprehensive material databases extracted from research papers are crucial for materials science and engineering, but their development requires significant human effort. With large language models (LLMs) transforming the way…

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