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Related papers: Evolutionary paths to lateralization of complex br…

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We study open-ended evolution by focusing on computational and information-processing dynamics underlying major evolutionary transitions. In doing so, we consider biological organisms as hierarchical dynamical systems that generate…

Many vertebrate motor and sensory systems decussate, or cross the midline to the opposite side of the body. The successful crossing of millions of axons during development requires a complex of tightly controlled regulatory processes.…

Neurons and Cognition · Quantitative Biology 2024-05-14 Troy Shinbrot , Wise Young

Bayesian networks (BNs) are a widely used class of probabilistic graphical models employed in numerous application domains. However, inferring the network's graphical structure from data remains challenging. Bayesian structure learners…

Machine Learning · Computer Science 2025-11-19 William Zhao , Guy Van den Broeck , Benjie Wang

It is widely believed that the brain performs approximate probabilistic inference to estimate causal variables in the world from ambiguous sensory data. To understand these computations, we need to analyze how information is represented and…

Neurons and Cognition · Quantitative Biology 2017-05-16 Xaq Pitkow , Dora Angelaki

By generalizing the notion of linearization, a concept originally arising from microlocal analysis and symbolic calculus, to diffeological spaces, we make a first proposal setting for optimization problems in this category. We show how…

Optimization and Control · Mathematics 2026-04-03 Jean-Pierre Magnot

We present a mathematical and philosophical framework in which brain function is modeled using sheaf theory over neural state spaces. Local neural or cognitive functions are represented as sections of a sheaf, while global coherence…

Neurons and Cognition · Quantitative Biology 2026-01-23 Takao Inoué

Recently, computational modelling became a very important research tool that enables us to study problems that for decades evaded scientific analysis. Evolutionary systems are certainly examples of such problems: they are composed of many…

Populations and Evolution · Quantitative Biology 2009-07-04 Adam Lipowski , Dorota Lipowska

Simulation and modeling are essential in product development, integrated into the design and manufacturing process to enhance efficiency and quality. They are typically represented as complex nonlinear differential algebraic equations. The…

Machine Learning · Computer Science 2026-03-25 Wenqiang Yang , Wenyuan Wu , Yong Feng , Changbo Chen

This study addresses the predictive limitation of probabilistic circuits and introduces transformations as a remedy to overcome it. We demonstrate this limitation in robotic scenarios. We motivate that independent component analysis is a…

Machine Learning · Statistics 2023-10-09 Tom Schierenbeck , Vladimir Vutov , Thorsten Dickhaus , Michael Beetz

Neural circuits can be reconstructed from brain images acquired by serial section electron microscopy. Image analysis has been performed by manual labor for half a century, and efforts at automation date back almost as far. Convolutional…

Computer Vision and Pattern Recognition · Computer Science 2019-05-01 Kisuk Lee , Nicholas Turner , Thomas Macrina , Jingpeng Wu , Ran Lu , H. Sebastian Seung

The anatomically layered structure of a human brain results in leveled functions. In all these levels of different functions, comparison, feedback and imitation are the universal and crucial mechanisms. Languages, symbols and tools play key…

Neurons and Cognition · Quantitative Biology 2018-02-07 Shengyong Xu , Jingjing Xu , Rujun Dai

The relationship between brain lateralization and cognitive functions is well-documented. The left hemisphere primarily handles tasks such as language and arithmetic, while the right hemisphere is involved in creative activities like…

Neurons and Cognition · Quantitative Biology 2026-04-28 Ko Watanabe , Pooja Pol , Nicolas Großmann , Shoya Ishimaru , Andreas Dengel

The human brains are organized into hierarchically modular networks facilitating efficient and stable information processing and supporting diverse cognitive processes during the course of development. While the remarkable reconfiguration…

Neurons and Cognition · Quantitative Biology 2020-09-16 Xuyun Wen , Liming Hsu , Weili Lin , Han Zhang , Dinggang Shen

Dynamics play a critical role in computation. The principled evolution of states over time enables both biological and artificial networks to represent and integrate information to make decisions. In the past few decades, significant…

Neurons and Cognition · Quantitative Biology 2023-11-28 Jason Z. Kim , Bart Larsen , Linden Parkes

Various research initiatives try to utilize the operational principles of organisms and brains to develop alternative, biologically inspired computing paradigms and artificial cognitive systems. This paper reviews key features of the…

Adaptation and Self-Organizing Systems · Physics 2012-01-25 Andreas Schierwagen

In branching simulation, a novel approach to simulation presented in this paper, a multiplicity of plausible scenarios are concurrently developed and implemented. In conventional simulations of complex systems, there arise from time to time…

Computational Engineering, Finance, and Science · Computer Science 2007-05-23 Mark Burgin , Walter Karplus , Damon Liu

Representational similarity metrics typically force all units to be matched, making them susceptible to noise and outliers common in neural representations. We extend the soft-matching distance to a partial optimal transport setting that…

Machine Learning · Computer Science 2026-02-24 Chaitanya Kapoor , Alex H. Williams , Meenakshi Khosla

Rapid advance of experimental techniques provides an unprecedented in-depth view into complex developmental processes. Still, little is known on how the complexity of multicellular organisms evolved by elaborating developmental programs and…

Molecular Networks · Quantitative Biology 2021-07-16 Somya Mani , Tsvi Tlusty

A computational theory and model of the ontogeny and development of bilateral symmetry in multicellular organisms is presented. Understanding the origin and evolution of bilateral organisms requires an understanding of how bilateral…

Tissues and Organs · Quantitative Biology 2012-07-16 Eric Werner

Deductive formalisms have been strongly developed in recent years; among them, Answer Set Programming (ASP) gained some momentum, and has been lately fruitfully employed in many real-world scenarios. Nonetheless, in spite of a large number…