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Electronic Health Records (EHRs) are integral for storing comprehensive patient medical records, combining structured data (e.g., medications) with detailed clinical notes (e.g., physician notes). These elements are essential for…

Computation and Language · Computer Science 2024-12-31 Yeonsu Kwon , Jiho Kim , Gyubok Lee , Seongsu Bae , Daeun Kyung , Wonchul Cha , Tom Pollard , Alistair Johnson , Edward Choi

Unified Structured Knowledge Reasoning (USKR) aims to answer natural language questions (NLQs) by using structured sources such as tables, databases, and knowledge graphs in a unified way. Existing USKR methods either rely on employing…

Computation and Language · Computer Science 2025-09-24 Yongrui Chen , Junhao He , Linbo Fu , Shenyu Zhang , Rihui Jin , Xinbang Dai , Jiaqi Li , Dehai Min , Nan Hu , Yuxin Zhang , Guilin Qi , Yi Huang , Tongtong Wu

Complex Query Answering (CQA) is a challenge task of Knowledge Graph (KG). Due to the incompleteness of KGs, query embedding (QE) methods have been proposed to encode queries and entities into the same embedding space, and treat logical…

Artificial Intelligence · Computer Science 2025-09-30 Yao Xu , Shizhu He , Cunguang Wang , Li Cai , Kang Liu , Jun Zhao

Medical multiple-choice question answering (MCQA) is particularly difficult. Questions may describe patient symptoms and ask for the correct diagnosis, which requires domain knowledge and complex reasoning. Standard language modeling…

Computation and Language · Computer Science 2023-03-14 Damien Sileo , Kanimozhi Uma , Marie-Francine Moens

Electronic Health Records (EHR) are high-dimensional data with implicit connections among thousands of medical concepts. These connections, for instance, the co-occurrence of diseases and lab-disease correlations can be informative when…

Machine Learning · Computer Science 2021-03-29 Weicheng Zhu , Narges Razavian

Electronic medical records (EMRs) contain essential data for patient care and clinical research. With the diversity of structured and unstructured data in EHR, data visualization is an invaluable tool for managing and explaining these…

Databases · Computer Science 2025-06-17 Haodi Zhang , Siqi Ning , Qiyong Zheng , Jinyin Nie , Liangjie Zhang , Weicheng Wang , Yuanfeng Song

Table Question Answering (TQA) aims to answer natural language questions about tabular data, often accompanied by additional contexts such as text passages. The task spans diverse settings, varying in table representation, question/answer…

Computation and Language · Computer Science 2026-04-21 Wei Zhou , Bolei Ma , Annemarie Friedrich , Mohsen Mesgar

Unstructured clinical notes contain essential patient information but are challenging for physicians to search and interpret efficiently. Although large language models (LLMs) have shown promise in question answering (QA), most existing…

Human-Computer Interaction · Computer Science 2025-05-27 Dina Albassam

Medical visual question answering (VQA) aims to answer clinically relevant questions regarding input medical images. This technique has the potential to improve the efficiency of medical professionals while relieving the burden on the…

Computer Vision and Pattern Recognition · Computer Science 2023-02-21 Xinyue Hu , Lin Gu , Kazuma Kobayashi , Qiyuan An , Qingyu Chen , Zhiyong Lu , Chang Su , Tatsuya Harada , Yingying Zhu

As conversational multimodal AI tools are increasingly adopted to process patient data for health assessment, robust benchmarks are needed to measure progress and expose failure modes under realistic conditions. Despite the importance of…

Sound · Computer Science 2026-03-06 Gaia A. Bertolino , Yuwei Zhang , Tong Xia , Domenico Talia , Cecilia Mascolo

We study a new problem setting of question answering (QA), referred to as DocTabQA. Within this setting, given a long document, the goal is to respond to questions by organizing the answers into structured tables derived directly from the…

Computation and Language · Computer Science 2024-08-22 Haochen Wang , Kai Hu , Haoyu Dong , Liangcai Gao

Existing text-to-SQL semantic parsers are typically designed for particular settings such as handling queries that span multiple tables, domains or turns which makes them ineffective when applied to different settings. We present UniSAr…

Computation and Language · Computer Science 2022-04-14 Longxu Dou , Yan Gao , Mingyang Pan , Dingzirui Wang , Wanxiang Che , Dechen Zhan , Jian-Guang Lou

Generating synthetic Electronic Health Records (EHRs) offers significant potential for data augmentation, privacy-preserving data sharing, and improving machine learning model training. We propose a novel tokenization strategy tailored for…

Machine Learning · Computer Science 2024-11-21 Hojjat Karami , David Atienza , Anisoara Ionescu

To improve the reliability of Large Language Models (LLMs) in clinical applications, retrieval-augmented generation (RAG) is extensively applied to provide factual medical knowledge. However, beyond general medical knowledge from open-ended…

Computation and Language · Computer Science 2025-05-29 Justice Ou , Tinglin Huang , Yilun Zhao , Ziyang Yu , Peiqing Lu , Rex Ying

Question Generation (QG), as a challenging Natural Language Processing task, aims at generating questions based on given answers and context. Existing QG methods mainly focus on building or training models for specific QG datasets. These…

Computation and Language · Computer Science 2022-12-06 Wei Yuan , Hongzhi Yin , Tieke He , Tong Chen , Qiufeng Wang , Lizhen Cui

Table understanding requires structured, multi-step reasoning. Large Language Models (LLMs) struggle with it due to the structural complexity of tabular data. Recently, multi-agent frameworks for SQL generation have shown promise in…

Computation and Language · Computer Science 2025-12-02 Songyuan Sui , Hongyi Liu , Serena Liu , Li Li , Soo-Hyun Choi , Rui Chen , Xia Hu

Knowledge from diverse application domains is organized as knowledge graphs (KGs) that are stored in RDF engines accessible in the web via SPARQL endpoints. Expressing a well-formed SPARQL query requires information about the graph…

Artificial Intelligence · Computer Science 2023-08-10 Reham Omar , Ishika Dhall , Panos Kalnis , Essam Mansour

Question answering systems are the latest evolution in information retrieval technology, designed to accept complex queries in natural language and provide accurate answers using both unstructured and structured knowledge sources. Knowledge…

Information Retrieval · Computer Science 2025-01-29 Arash Ghafouri , Mahdi Firouzmandi , Hasan Naderi

Electronic Health Records (EHR) store clinical documentation as base64 encoded attachments in FHIR DocumentReference resources, which makes semantic question answering difficult. Traditional vector database methods often miss nuanced…

Computation and Language · Computer Science 2025-10-31 Tarun Kumar Chawdhury , Jon D. Duke

Clinical problem-solving requires processing of semantic medical knowledge such as illness scripts and numerical medical knowledge of diagnostic tests for evidence-based decision-making. As large language models (LLMs) show promising…