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Computational methods have reshaped the landscape of modern biology. While the biomedical community is increasingly dependent on computational tools, the mechanisms ensuring open data, open software, and reproducibility are variably…

Other Quantitative Biology · Quantitative Biology 2020-07-28 Jaqueline J. Brito , Jun Li , Jason H. Moore , Casey S. Greene , Nicole A. Nogoy , Lana X. Garmire , Serghei Mangul

In recent years, a lot of technological advances in computer science have aided software programmers to create innovative and real-time user-friendly software. With the creation of the software and the urging interest of people to learn to…

Software Engineering · Computer Science 2025-03-25 Kuldeep Gautam , S. VenkataKeerthy , Ramakrishna Upadrasta

Purpose: Researchers frequently encounter the following problems when writing scientific articles: (1) Selecting appropriate citations to support the research idea is challenging. (2) The literature review is not conducted extensively,…

Information Retrieval · Computer Science 2021-05-04 Haihua Chen

Academic institutions, federal agencies, publishers, editors, authors, and librarians increasingly rely on citation analysis for making hiring, promotion, tenure, funding, and/or reviewer and journal evaluation and selection decisions. The…

Digital Libraries · Computer Science 2007-05-23 Lokman I. Meho , Kiduk Yang

Peer review and citation metrics are two means of gauging the value of scientific research, but the lack of publicly available peer review data makes the comparison of these methods difficult. Mathematics can serve as a useful laboratory…

Digital Libraries · Computer Science 2020-12-17 Lawrence Smolinsky , Daniel S. Sage , Aaron J. Lercher , Aaron Cao

Data analysis in space sciences has been performed exclusively visually for years, despite the fact that the largest amount of data belongs to non-visible portions of the electromagnetic spectrum. This, on the one hand, limits the study of…

Instrumentation and Methods for Astrophysics · Physics 2023-05-10 Johanna Casado , Beatriz García

In today's data-driven research landscape, dataset visibility and accessibility play a crucial role in advancing scientific knowledge. At the same time, data citation is essential for maintaining academic integrity, acknowledging…

Digital Libraries · Computer Science 2025-06-23 Fakhri Momeni , Janete Saldanha Bach , Brigitte Mathiak , Peter Mutschke

Background: Classifications in meta-research enable researchers to cope with an increasing body of scientific knowledge. They provide a framework for, e.g., distinguishing methods, reports, reproducibility, and evaluation in a knowledge…

Software Engineering · Computer Science 2022-09-22 Angelika Kaplan , Thomas Kühn , Ralf Reussner

Research data are often released upon journal publication to enable result verification and reproducibility. For that reason, research dissemination infrastructures typically support diverse datasets coming from numerous disciplines, from…

Digital Libraries · Computer Science 2023-05-29 Ana Trisovic

Background: Software development results in the production of various types of artifacts: source code, version control system metadata, bug reports, mailing list conversations, test data, etc. Empirical software engineering (ESE) has…

Software Engineering · Computer Science 2022-07-19 Zeinab Abou Khalil , Stefano Zacchiroli

Advances in technologies like artificial intelligence and metaverse have led to a proliferation of software systems in business and everyday life. With this widespread penetration, the carbon emissions of software are rapidly growing as…

Software Engineering · Computer Science 2025-06-12 Rohit Mehra , Priyavanshi Pathania , Vibhu Saujanya Sharma , Vikrant Kaulgud , Sanjay Podder , Adam P. Burden

We present an overview of the SCIDOCA 2025 Shared Task, which focuses on citation discovery and prediction in scientific documents. The task is divided into three subtasks: (1) Citation Discovery, where systems must identify relevant…

Digital Libraries · Computer Science 2025-09-30 An Dao , Vu Tran , Le-Minh Nguyen , Yuji Matsumoto

We present a citation pattern analysis between astronomical papers and 13 other disciplines, based on the arXiv database over the past decade ($2010 - 2020$). We analyze 12,600 astronomical papers citing over 14,531 unique publications…

Instrumentation and Methods for Astrophysics · Physics 2022-06-07 Michele Delli Veneri , Rafael S. de Souza , Alberto Krone-Martins , Emille E. O. Ishida , Maria Luiza L. Dantas , Noble Kennamer

A new methodology is proposed for comparing Google Scholar (GS) with other citation indexes. It focuses on the coverage and citation impact of sources, indexing speed, and data quality, including the effect of duplicate citation counts. The…

Digital Libraries · Computer Science 2016-05-03 Henk F. Moed , Judit Bar-Ilan , Gali Halevi

Digital Science's Dimensions is envisaged as a next-generation research and discovery platform for a better and more efficient access to cross-referenced scholarly publications, grants, patents, and clinical trials. As a new addition to the…

Digital Libraries · Computer Science 2020-12-24 Chaomei Chen

Evaluation of journals for quality is one of the dominant themes of bibliometrics since journals are the primary venue of vetting and distribution of scholarship. There are many criticisms of quantifying journal impact with bibliometrics…

Digital Libraries · Computer Science 2021-02-23 Domenic Rosati

Almost all research work in computational neuroscience involves software. As researchers try to understand ever more complex systems, there is a continual need for software with new capabilities. Because of the wide range of questions being…

Neurons and Cognition · Quantitative Biology 2013-11-21 Marc-Oliver Gewaltig , Robert Cannon

This is a position paper for Sharing, Re-Use and Circulation of Resources in Cooperative Scientific Work, a CSCW'14 workshop. It discusses the role of software in NSF's CIF21 vision and the SI2 program, which is intended to support that…

Software Engineering · Computer Science 2014-10-28 Daniel S. Katz

Scientific computation is a discipline that combines numerical analysis, physical understanding, algorithm development, and structured programming. Several yottacycles per year on the world's largest computers are spent simulating problems…

Programming Languages · Computer Science 2018-01-10 Matthew G. Knepley

We study the dependence of citation counts of e-prints published on the arXiv:astro-ph server on their position in the daily astro-ph listing. Using the SPIRES literature database we reconstruct the astro-ph listings from July 2002 to…

Astrophysics · Physics 2009-11-13 J. P. Dietrich
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