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Angiogenesis, the development of new vasculature, is a critical process in the growth of new tumors. Driven by a goal to understand this aspect of cancer proliferation, I develop a discrete computationally optimized mathematical model of…

Cell Behavior · Quantitative Biology 2016-02-11 Dibya Jyoti Ghosh

The initiation of directional cell motion requires symmetry breaking that can happen both with or without external stimuli. During cell crawling, forces generated by the cytoskeleton and their transmission through mechanosensitive adhesions…

Cell Behavior · Quantitative Biology 2023-06-02 Yuzhu Chen , David Saintillan , Padmini Rangamani

Coronal and interplanetary shock waves produced by coronal mass ejections (CMEs) are major drivers of space-weather phenomena, inducing major changes in the heliospheric radiation environment and directly perturbing the near-Earth…

Solar and Stellar Astrophysics · Physics 2023-04-12 Manon Jarry , Alexis P. Rouillard , Illya Plotnikov , Athanasios Kouloumvakos , Alexander Warmuth

Neuromuscular disorders, such as Spinal Muscular Atrophy (SMA) and Duchenne Muscular Dystrophy (DMD), cause progressive muscular degeneration and loss of motor function for 1 in 6,000 children. Traditional upper limb motor function…

Despite studying Coronal Mass Ejections (CMEs) for several years, we are yet to have a complete understanding of their kinematics. In this regard, the change in kinematics of the CMEs, as they travel from the inner corona ($<$ 3R$_\odot)$…

Solar and Stellar Astrophysics · Physics 2021-10-13 Satabdwa Majumdar , Ritesh Patel , Vaibhav Pant , Dipankar Banerjee

Multiple Sclerosis is a chronic autoimmune disorder characterized by the degradation of the myelin sheath in the central nervous system, leading to neurological impairments. In this work, we analyze a reaction-diffusion model derived from…

Tissues and Organs · Quantitative Biology 2026-03-10 Romina Travaglini , Rossella Della Marca

We present a new approach for modelling musculoskeletal anatomy. Unlike previous methods, we do not model individual muscle shapes as geometric primitives (polygonal meshes, NURBS etc.). Instead, we adopt a volumetric segmentation approach…

Graphics · Computer Science 2021-06-10 Rinat Abdrashitov , Seungbae Bang , David I. W. Levin , Karan Singh , Alec Jacobson

Atherosclerosis is characterised by the growth of fatty plaques in the inner (intimal) layer of the artery wall. In mature plaques, vascular smooth muscle cells (SMCs) are recruited from the adjacent medial layer to deposit a cap of fibrous…

Cell Behavior · Quantitative Biology 2019-08-09 Michael G. Watson , Helen M. Byrne , Charlie Macaskill , Mary R. Myerscough

There is currently limited understanding of the role played by haemodynamic forces on the processes governing vascular development. One of many obstacles to be overcome is being able to measure those forces, at the required resolution…

Neurodegeneration affects cortical gray matter leading to loss of cortical mantle volume. As a result of such volume loss, the geometrical arrangement of the regions on the cortical surface is expected to be altered in comparison to healthy…

Neurons and Cognition · Quantitative Biology 2016-11-16 Amanmeet Garg , Donghuan Lu , Karteek Popuri , Mirza Faisal Beg

Coronary anatomy governs local haemodynamics associated with atherosclerotic development, progression and ultimately adverse clinical outcomes. However, lack of large sample size studies and methods to link adverse haemodynamics to…

Medical Physics · Physics 2024-01-24 R. Gharleghi , M. Zhang , C. Shen , M. Webster , C. Ellis , S. Beier

Brain stimulation is a powerful tool for understanding cortical function and holds promise for therapeutic interventions in neuropsychiatric disorders. Initial visual prosthetics apply electric microstimulation to early visual cortex which…

Neurons and Cognition · Quantitative Biology 2025-10-07 Johannes Mehrer , Ben Lonnqvist , Anna Mitola , Abdulkadir Gokce , Paolo Papale , Martin Schrimpf

Kidney branching morphogenesis has been studied extensively, but the mechanism that defines the branch points is still elusive. Here we obtained a 2D movie of kidney branching morphogenesis in culture to test different models of branching…

Tissues and Organs · Quantitative Biology 2013-07-02 Srivathsan Adivarahan , Denis Menshykau , Odysse Michos , Dagmar Iber

A molecular-dynamics type simulation method, which is suitable for investigating the dewetting dynamics of thin and viscous liquid layers, is discussed. The efficiency of the method is exemplified by studying a two-parameter depinning-like…

Soft Condensed Matter · Physics 2015-06-22 Botond Tyukodi , Yves Brechet , Zoltan Neda

Wrinkling is the phenomenon of out-of-plane deformation patterns in thin walled structures, as a result of a local compressive (internal) loads in combination with a large membrane stiffness and a small but non-zero bending stiffness.…

Numerical Analysis · Mathematics 2025-03-20 H. M. Verhelst , M. Möller , J. H. Den Besten

Recent studies in mammalian hearts show that left ventricular wall thickening is an important mechanism for systolic ejection and that during contraction the cardiac muscle develops significant stresses in the muscular cross-fiber…

Analysis of PDEs · Mathematics 2008-12-04 Christian Bourdarias , Stéphane Gerbi , Jacques Ohayon

Kinetically constrained models (KCMs) are models of glass formers based on the concept of dynamic facilitation. This concept accounts for many of the characteristics of the glass transition. KCMs usually display a combination of simple…

Statistical Mechanics · Physics 2007-05-23 Stephen Whitelam , Juan P. Garrahan

We propose a general multiscale approach for the mechanical behavior of three-dimensional networks of macromolecules undergoing strain-induced unfolding. Starting from a (statistically based) energetic analysis of the macromolecule…

Soft Condensed Matter · Physics 2015-06-22 Domenico De Tommasi , Giuseppe Puglisi , Giuseppe Saccomandi

The mechanical behaviour of solid biological tissues has long been described using models based on classical continuum mechanics. However, the classical continuum theories of elasticity and viscoelasticity cannot easily capture the…

Biological Physics · Physics 2017-05-16 Shakti N. Menon , Cameron L. Hall , Scott W. McCue , D. L. Sean McElwain

Connecting cell behavior to tissue shape and mechanics is a key challenge in the physics of morphogenesis. Cytoskeletal turnover precludes a fixed reference state, and tensions are actively generated independently of strain; so conventional…

Soft Condensed Matter · Physics 2026-05-28 Nikolas H. Claussen , Fridtjof Brauns , Boris I. Shraiman