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The Biocreative VII Track-2 challenge consists of named entity recognition, entity-linking (or entity-normalization), and topic indexing tasks -- with entities and topics limited to chemicals for this challenge. Named entity recognition is…

Computation and Language · Computer Science 2021-12-01 Virginia Adams , Hoo-Chang Shin , Carol Anderson , Bo Liu , Anas Abidin

Named entity recognition has been extensively studied on English news texts. However, the transfer to other domains and languages is still a challenging problem. In this paper, we describe the system with which we participated in the first…

Computation and Language · Computer Science 2020-07-03 Lukas Lange , Heike Adel , Jannik Strötgen

Recognizing entities in texts is a central need in many information-seeking scenarios, and indeed, Named Entity Recognition (NER) is arguably one of the most successful examples of a widely adopted NLP task and corresponding NLP technology.…

Computation and Language · Computer Science 2023-10-24 Uri Katz , Matan Vetzler , Amir DN Cohen , Yoav Goldberg

Named entity recognition (NER) of chemicals and drugs is a critical domain of information extraction in biochemical research. NER provides support for text mining in biochemical reactions, including entity relation extraction, attribute…

Computation and Language · Computer Science 2020-12-22 Jian Liu , Lei Gao , Sujie Guo , Rui Ding , Xin Huang , Long Ye , Qinghua Meng , Asef Nazari , Dhananjay Thiruvady

Named Entity Recognition (NER) serves as a foundational component in many natural language processing (NLP) pipelines. However, current NER models typically output a single predicted label sequence without any accompanying measure of…

Computation and Language · Computer Science 2026-01-27 Matthew Singer , Srijan Sengupta , Karl Pazdernik

In this report, we describe our participant named-entity recognition system at VLSP 2018 evaluation campaign. We formalized the task as a sequence labeling problem using BIO encoding scheme. We applied a feature-based model which combines…

Computation and Language · Computer Science 2018-03-23 Pham Quang Nhat Minh

Named Entity Recognition (NER) or the extraction of concepts from clinical text is the task of identifying entities in text and slotting them into categories such as problems, treatments, tests, clinical departments, occurrences (such as…

Computation and Language · Computer Science 2022-08-31 Namrata Nath , Sang-Heon Lee , Ivan Lee

Background: Named Entity Recognition (NER) and Normalisation (NEN) are core components of any text-mining system for biomedical texts. In a traditional concept-recognition pipeline, these tasks are combined in a serial way, which is…

Computation and Language · Computer Science 2020-08-11 Lenz Furrer , Joseph Cornelius , Fabio Rinaldi

Named entity recognition (NER) is the very first step in the linguistic processing of any new domain. It is currently a common process in BioNLP on English clinical text. However, it is still in its infancy in other major languages, as it…

Computation and Language · Computer Science 2019-12-20 Fernando Sánchez León , Ana González Ledesma

Named Entity Recognition (NER) aims to extract and classify entity mentions in the text into pre-defined types (e.g., organization or person name). Recently, many works have been proposed to shape the NER as a machine reading comprehension…

Computation and Language · Computer Science 2023-09-21 Yibo Wang , Wenting Zhao , Yao Wan , Zhongfen Deng , Philip S. Yu

In the field of Natural Language Processing (NLP), Named Entity Recognition (NER) is recognized as a critical technology, employed across a wide array of applications. Traditional methodologies for annotating datasets for NER models are…

Computation and Language · Computer Science 2025-01-03 Yuji Naraki , Ryosuke Yamaki , Yoshikazu Ikeda , Takafumi Horie , Kotaro Yoshida , Ryotaro Shimizu , Hiroki Naganuma

Named entity recognition (NER) is a fundamental part of extracting information from documents in biomedical applications. A notable advantage of NER is its consistency in extracting biomedical entities in a document context. Although…

Computation and Language · Computer Science 2022-10-25 Minbyul Jeong , Jaewoo Kang

Named Entity Recognition (NER) is a key NLP task, which is all the more challenging on Web and user-generated content with their diverse and continuously changing language. This paper aims to quantify how this diversity impacts…

Computation and Language · Computer Science 2017-03-09 Isabelle Augenstein , Leon Derczynski , Kalina Bontcheva

The CoNLL-03 corpus is arguably the most well-known and utilized benchmark dataset for named entity recognition (NER). However, prior works found significant numbers of annotation errors, incompleteness, and inconsistencies in the data.…

Computation and Language · Computer Science 2023-10-26 Susanna Rücker , Alan Akbik

Named Entity Recognition seeks to extract substrings within a text that name real-world objects and to determine their type (for example, whether they refer to persons or organizations). In this survey, we first present an overview of…

Computation and Language · Computer Science 2024-12-23 Imed Keraghel , Stanislas Morbieu , Mohamed Nadif

Named Entity Recognition (NER) is a crucial upstream task in Natural Language Processing (NLP). Traditional tag scheme approaches offer a single recognition that does not meet the needs of many downstream tasks such as coreference…

Computation and Language · Computer Science 2020-04-30 Wendong He , Yizhen Shao , Pingjian Zhang

Retail item data contains many different forms of text like the title of an item, the description of an item, item name and reviews. It is of interest to identify the item name in the other forms of text using a named entity tagger.…

Computation and Language · Computer Science 2021-09-29 Ryan Siskind , Shalin Shah

Automated knowledge discovery from trending chemical literature is essential for more efficient biomedical research. How to extract detailed knowledge about chemical reactions from the core chemistry literature is a new emerging challenge…

Computation and Language · Computer Science 2021-08-31 Chenkai Sun , Weijiang Li , Jinfeng Xiao , Nikolaus Nova Parulian , ChengXiang Zhai , Heng Ji

Named entity recognition (NER) is the task to identify mentions of rigid designators from text belonging to predefined semantic types such as person, location, organization etc. NER always serves as the foundation for many natural language…

Computation and Language · Computer Science 2023-04-26 Jing Li , Aixin Sun , Jianglei Han , Chenliang Li

Speech Entity Linking aims to recognize and disambiguate named entities in spoken languages. Conventional methods suffer gravely from the unfettered speech styles and the noisy transcripts generated by ASR systems. In this paper, we propose…

Computation and Language · Computer Science 2022-09-30 Shen Huang , Yuchen Zhai , Xinwei Long , Yong Jiang , Xiaobin Wang , Yin Zhang , Pengjun Xie
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