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Quantifying the similarity between two graphs is a fundamental algorithmic problem at the heart of many data analysis tasks for graph-based data. In this paper, we study the computational complexity of a family of similarity measures based…

Discrete Mathematics · Computer Science 2022-07-04 Timo Gervens , Martin Grohe

Graph similarity computation is one of the core operations in many graph-based applications, such as graph similarity search, graph database analysis, graph clustering, etc. Since computing the exact distance/similarity between two graphs…

Machine Learning · Computer Science 2021-05-18 Yunsheng Bai , Hao Ding , Yizhou Sun , Wei Wang

Neutral atom technology has steadily demonstrated significant theoretical and experimental advancements, positioning itself as a front-runner platform for running quantum algorithms. One unique advantage of this technology lies in the…

We introduce GSimCNN (Graph Similarity Computation via Convolutional Neural Networks) for predicting the similarity score between two graphs. As the core operation of graph similarity search, pairwise graph similarity computation is a…

Machine Learning · Computer Science 2018-11-15 Yunsheng Bai , Hao Ding , Yizhou Sun , Wei Wang

Finding the graphs that are most similar to a query graph in a large database is a common task with various applications. A widely-used similarity measure is the graph edit distance, which provides an intuitive notion of similarity and…

Databases · Computer Science 2021-10-05 Franka Bause , David B. Blumenthal , Erich Schubert , Nils M. Kriege

Graph distance metric learning serves as the foundation for many graph learning problems, e.g., graph clustering, graph classification and graph matching. Existing research works on graph distance metric (or graph kernels) learning fail to…

Machine Learning · Computer Science 2020-02-11 Jiawei Zhang

Diagnosing the minimal set of faults capable of explaining a set of given observations, e.g., from sensor readouts, is a hard combinatorial optimization problem usually tackled with artificial intelligence techniques. We present the mapping…

Removing overlaps is a central task in domains such as scheduling, visibility, and map labelling. This can be modelled using graphs, where overlap removals correspond to enforcing a certain sparsity constraint on the graph structure. We…

Computational Geometry · Computer Science 2026-04-08 Nicolás Honorato-Droguett , Kazuhiro Kurita , Tesshu Hanaka , Hirotaka Ono , Alexander Wolff

Large-scale graphs are widely used to represent object relationships in many real world applications. The occurrence of large-scale graphs presents significant computational challenges to process, analyze, and extract information. Graph…

Social and Information Networks · Computer Science 2019-10-11 Yu Jin , Andreas Loukas , Joseph F. JaJa

The \textit{biharmonic distance} (BD) is a fundamental metric that measures the distance of two nodes in a graph. It has found applications in network coherence, machine learning, and computational graphics, among others. In spite of BD's…

Social and Information Networks · Computer Science 2024-08-27 Changan Liu , Ahad N. Zehmakan , Zhongzhi Zhang

Quantum annealers offer an efficient way to compute high quality solutions of NP-hard problems when expressed in a QUBO (quadratic unconstrained binary optimization) or an Ising form. This is done by mapping a problem onto the physical…

Quantum Physics · Physics 2022-04-26 Elijah Pelofske , Georg Hahn , Hristo N. Djidjev

We propose a novel method using a quantum annealer -- an analog quantum computer based on the principles of quantum adiabatic evolution -- to solve the Graph Isomorphism problem, in which one has to determine whether two graphs are…

Quantum Physics · Physics 2013-05-30 Itay Hen , A. P. Young

Graph similarity search is among the most important graph-based applications, e.g. finding the chemical compounds that are most similar to a query compound. Graph similarity computation, such as Graph Edit Distance (GED) and Maximum Common…

Machine Learning · Computer Science 2020-03-03 Yunsheng Bai , Hao Ding , Song Bian , Ting Chen , Yizhou Sun , Wei Wang

The edit distance between two graphs is a widely used measure of similarity that evaluates the smallest number of vertex and edge deletions/insertions required to transform one graph to another. It is NP-hard to compute in general, and a…

Data Structures and Algorithms · Computer Science 2019-04-22 Utkan Onur Candogan , Venkat Chandrasekaran

Quantum error mitigation (QEM) provides a practical route for estimating reliable observables on noisy intermediate-scale quantum (NISQ) devices. Traditional QEM strategies, including zero-noise extrapolation (ZNE) and Clifford data…

Quantum Physics · Physics 2026-04-21 Huaxin Wang , Xinge Wu , Jiajun Liu , Ruiqing He , Jiandong Shang , Hengliang Guo , Qiang Chen

Recently, more and more research has focused on using Graph Neural Networks (GNN) to solve the Graph Similarity Computation problem (GSC), i.e., computing the Graph Edit Distance (GED) between two graphs. These methods treat GSC as an…

Artificial Intelligence · Computer Science 2023-08-29 Jiaxi Lv , Liang Zhang , Yi Huang , Jiancheng Huang , Shifeng Chen

Graph coarsening is a technique for solving large-scale graph problems by working on a smaller version of the original graph, and possibly interpolating the results back to the original graph. It has a long history in scientific computing…

Machine Learning · Computer Science 2023-06-16 Yifan Chen , Rentian Yao , Yun Yang , Jie Chen

In well-studied graph modification problems, adding and deleting vertices and edges are used as graph editing operations. We propose a model for graph modification on geometric intersection graphs called Geometric Graph Edit Distance that…

Data Structures and Algorithms · Computer Science 2026-04-03 Nicolás Honorato-Droguett , Kazuhiro Kurita , Tesshu Hanaka , Hirotaka Ono

In this work, we explore graph partitioning (GP) using quantum annealing on the D-Wave 2X machine. Motivated by a recently proposed graph-based electronic structure theory applied to quantum molecular dynamics (QMD) simulations, graph…

Quantum Physics · Physics 2017-05-10 Hayato Ushijima-Mwesigwa , Christian F. A. Negre , Susan M. Mniszewski

The graph isomorphism problem asks whether two graphs are identical up to vertex relabeling. While the exact problem admits quasi-polynomial-time classical algorithms, many applications in molecular comparison, noisy network analysis, and…

Quantum Physics · Physics 2026-03-31 Prateek P. Kulkarni