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A fibration of graphs is an homomorphism that is a local isomorphism of in-neighbourhoods, much in the same way a covering projection is a local isomorphism of neighbourhoods. Recently, it has been shown that graph fibrations are useful…

Quantitative Methods · Quantitative Biology 2022-11-23 Paolo Boldi , Ian Leifer , Hernán A. Makse

Understanding the dynamical behavior of complex systems from their underlying network architectures is a long-standing question in complexity theory. Therefore, many metrics have been devised to extract network features like motifs,…

Neurons and Cognition · Quantitative Biology 2024-09-05 Bryant Avila , Pedro Augusto , David Phillips , Tommaso Gili , Manuel Zimmer , Hernán A. Makse

Coupled cell systems model interacting dynamical units and provide a natural framework for studying synchrony phenomena arising from collective behavior. Graph symmetries often induce such patterns, but certain networks exhibit additional…

Dynamical Systems · Mathematics 2026-03-05 Nicolas Brito , Miriam Manoel

Graph matching, also known as network alignment, refers to finding a bijection between the vertex sets of two given graphs so as to maximally align their edges. This fundamental computational problem arises frequently in multiple fields…

Data Structures and Algorithms · Computer Science 2021-08-10 Cheng Mao , Mark Rudelson , Konstantin Tikhomirov

Symmetries are an essential feature of complex networks as they regulate how the graph collective dynamics organizes into clustered states. We here show how to control network symmetries, and how to enforce patterned states of…

Physics and Society · Physics 2020-11-24 L. V. Gambuzza , M. Frasca , F. Sorrentino , L. M. Pecora , S. Boccaletti

Network equilibrium models represent a versatile tool for the analysis of interconnected objects and their relationships. They have been widely employed in both science and engineering to study the behavior of complex systems under various…

Adaptation and Self-Organizing Systems · Physics 2024-10-31 Omar Aloui , David Orden , Nizar Bel Hadj Ali , Landolf Rhode-Barbarigos

Symmetries in a network connectivity regulate how the graph's functioning organizes into clustered states. Classical methods for tracing the symmetry group of a network require very high computational costs, and therefore they are of hard,…

Adaptation and Self-Organizing Systems · Physics 2022-01-05 Pitambar Khanra , Subrata Ghosh , Karin Alfaro-Bittner , Prosenjit Kundu , Stefano Boccaletti , Chittaranjan Hens , Pinaki Pal

The problems studied in this paper originate from Graph Motif, a problem introduced in 2006 in the context of biological networks. Informally speaking, it consists in deciding if a multiset of colors occurs in a connected subgraph of a…

Computational Complexity · Computer Science 2014-09-11 Romeo Rizzi , Florian Sikora

We introduce a new distributed algorithm for aligning graphs or finding substructures within a given graph. It is based on the cavity method and is used to study the maximum-clique and the graph-alignment problems in random graphs. The…

Quantitative Methods · Quantitative Biology 2010-04-02 S. Bradde , A. Braunstein , H. Mahmoudi , F. Tria , M. Weigt , R. Zecchina

We study a variation of the graph colouring problem on random graphs of finite average connectivity. Given the number of colours, we aim to maximise the number of different colours at neighbouring vertices (i.e. one edge distance) of any…

Statistical Mechanics · Physics 2009-11-11 S. Bounkong , J. van Mourik , D. Saad

Capturing how the Caenorhabditis elegans connectome structure gives rise to its neuron functionality remains unclear. It is through fiber symmetries found in its neuronal connectivity that synchronization of a group of neurons can be…

Neurons and Cognition · Quantitative Biology 2024-05-07 Bryant Avila , Pedro Augusto , Manuel Zimmer , Matteo Serafino , Hernán A. Makse

One of the most important concepts in biological network analysis is that of network motifs, which are patterns of interconnections that occur in a given network at a frequency higher than expected in a random network. In this work we are…

Discrete Mathematics · Computer Science 2020-05-29 Diego P Rubert , Eloi Araujo , Marco A Stefanes , Jens Stoye , Fábio V Martinez

We consider the problem of graph generation guided by network statistics, i.e., the generation of graphs which have given values of various numerical measures that characterize networks, such as the clustering coefficient and the number of…

Social and Information Networks · Computer Science 2023-03-02 Jérôme Kunegis , Jun Sun , Eiko Yoneki

Given a pair of graphs with the same number of vertices, the inexact graph matching problem consists in finding a correspondence between the vertices of these graphs that minimizes the total number of induced edge disagreements. We study…

Machine Learning · Statistics 2020-07-06 Jesús Arroyo , Daniel L. Sussman , Carey E. Priebe , Vince Lyzinski

An edge-colored graph is said to be balanced if it has an equal number of edges of each color. Given a graph $G$ whose edges are colored using two colors and a positive integer $k$, the objective in the Edge Balanced Connected Subgraph…

Data Structures and Algorithms · Computer Science 2024-04-03 P. S. Ardra , R. Krithika , Saket Saurabh , Roohani Sharma

The problem of finding the vertex correspondence between two noisy graphs with different number of vertices where the smaller graph is still large has many applications in social networks, neuroscience, and computer vision. We propose a…

Machine Learning · Statistics 2019-07-03 Daniel L. Sussman , Youngser Park , Carey E. Priebe , Vince Lyzinski

This work introduces a systematic algorithm for generating directed networks with prescribed symmetries by constructing expansions from a given quotient network. The method enables researchers to synthesize realistic network models with…

Physics and Society · Physics 2025-11-03 Jonathan Martinez , Teresa Radice , Francesco Sorrentino

In the field of complex networks and graph theory, new results are typically tested on graphs generated by a variety of algorithms such as the Erd\H{o}s-R\'{e}nyi model or the Barab\'{a}si-Albert model. Unfortunately, most graph generating…

Combinatorics · Mathematics 2018-08-16 Isaac Klickstein , Francesco Sorrentino

An important measure of signed graphs is the line index of balance which has several applications in many fields. However, this graph-theoretic measure was underused for decades because of the inherent complexity in its computation which is…

Social and Information Networks · Computer Science 2018-02-08 Samin Aref , Andrew J. Mason , Mark C. Wilson

Network alignment is a problem of finding the node mapping between similar networks. It links the data from separate sources and is widely studied in bioinformation and social network fields. The critical difference between network…

Social and Information Networks · Computer Science 2021-07-26 Hailong Li , Naiyue Chen
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