Related papers: The space of equidistant phylogenetic cactuses
We study affine maps between CAT(0) spaces with geometric actions, and show that they essentially split as products of dilations and linear maps (on the Euclidean factor). This extends known results from the Riemannian case. Furthermore, we…
Phylogenetic networks are becoming increasingly popular in phylogenetics since they have the ability to describe a wider range of evolutionary events than their tree counterparts. In this paper, we study Markov models on phylogenetic…
Using uniformization, Cantor type sets can be regarded as boundaries of rooted trees. In this setting, we show that the trace of a first-order Sobolev space on the boundary of a regular rooted tree is exactly a Besov space with an explicit…
We consider actions of locally compact groups $G$ on certain CAT(0) spaces $X$ by isometries. The CAT(0) spaces we consider have finite dimension at large scale. In case $B$ is a $G$-boundary, that is a measurable $G$-space with amenability…
Rooted phylogenetic networks provide an explicit representation of the evolutionary history of a set $X$ of sampled species. In contrast to phylogenetic trees which show only speciation events, networks can also accommodate reticulate…
In order to develop statistical methods for shapes with a tree-structure, we construct a shape space framework for tree-like shapes and study metrics on the shape space. This shape space has singularities, corresponding to topological…
In the present paper we investigate geometric characteristics of compact metric spaces, which can be described in terms of Gromov-Hausdorff distances to simplexes, i.e., to finite metric spaces such that all their nonzero distances are…
Given a rooted, binary phylogenetic network and a rooted, binary phylogenetic tree, can the tree be embedded into the network? This problem, called \textsc{Tree Containment}, arises when validating networks constructed by phylogenetic…
We first prove that for all compact metrizable spaces, there exists a topological embedding of the compact metrizable space into each of the sets of compact metric spaces which are connected, path-connected, geodesic, or CAT(0), in the…
Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…
Phylogenetic networks are a generalization of phylogenetic trees that are used to represent reticulate evolution. Unrooted phylogenetic networks form a special class of such networks, which naturally generalize unrooted phylogenetic trees.…
A phylogenetic tree is an acyclic graph with distinctly labeled leaves, whose internal edges have a positive weight. Given a set of n leaves, the collection of all phylogenetic trees with this leaf set can be assembled into a metric cube…
We view ultrametric spaces as two-sorted structures consisting of a set of points and of a linearly ordered set of distances. We call the appropriate notion of embeddings distance-carrying (dc for short). Those are obtained by combining…
The hybridization number problem requires us to embed a set of binary rooted phylogenetic trees into a binary rooted phylogenetic network such that the number of nodes with indegree two is minimized. However, from a biological point of view…
We introduce a novel concept of rank for subsets of finite metric spaces E^n_q (the set of all n-dimensional vectors over an alphabet of size q) equipped with the Hamming distance, where the rank R(A) of a subset A is defined as the number…
We investigate CAT(0) metric spaces whose associated Tits boundary is compact. Prominent examples of such spaces are of course the euclidean ones. However there exist non trivial geodesically complete CAT(0) spaces with compact Tits…
Let X be a tree of proper geodesic spaces with edge spaces strongly contracting and uniformly separated from each other by a number depending on the contraction function of edge spaces. Then we prove that the strongly contracting geodesics…
Using the wedge sum of metric spaces, for all compact metrizable spaces, we construct a topological embedding of the compact metrizable space into the set of all metric trees in the Gromov--Hausdorff space with finite prescribed values. As…
Phylogenetic networks are used to represent the evolutionary history of species. They are versatile when compared to traditional phylogenetic trees, as they capture more complex evolutionary events such as hybridization and horizontal gene…
We prove that if X is a complete geodesic metric space with uniformly generated first homology group and $f: X\to R$ is metrically proper on the connected components and bornologous, then X is quasi-isometric to a tree. Using this and…